Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of Rex in Staphylococcus epidermidis ATCC 12228

Properties
Regulator type: Transcription factor
TF locus tag: SE1647
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Staphylococcaceae
Statistics of regulated genes:
- Genes 27
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 74 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -208
Score: 4.9
Sequence: TAGTAAAAACATTCACAA
Position: -164
Score: 5.3
Sequence: ATGTGATTTAATTCACTA
Locus tag: SE2073
Name: frp
Funciton: NAD(P)H-flavin oxidoreductase
frp
NAD(P)H-flavin oxidoreductase

Position: -100
Score: 5.5
Sequence: TAGTGAATTAAATCACAT
Position: -56
Score: 4.9
Sequence: TTGTGAATGTTTTTACTA
Locus tag: SE2074
Name: ddh
Funciton: D-lactate dehydrogenase (EC 1.1.1.28)
ddh
D-lactate dehydrogenase (EC 1.1.1.28)

Position: -76
Score: 5.5
Sequence: TTGTGAATTAAATCACAC
Locus tag: SE0106
Name: arcA
Funciton: Arginine deiminase (EC 3.5.3.6)
Locus tag: SE0105
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
Locus tag: SE0104
Name: arcR2
Funciton: Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family
Locus tag: SE0103
Name: arcB
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: SE0102
Name: arcC
Funciton: Carbamate kinase (EC 2.7.2.2)
arcA
Arginine deiminase (EC 3.5.3.6)
arcD
Arginine/ornithine antiporter ArcD
arcR2
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family
arcB
Ornithine carbamoyltransferase (EC 2.1.3.3)
arcC
Carbamate kinase (EC 2.7.2.2)

Position: -76
Score: 4.8
Sequence: ATGTGATAATCATCACGA
Locus tag: SE2217
Name: arcA
Funciton: Arginine deiminase (EC 3.5.3.6)
Locus tag: SE2216
Name: arcB
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
arcA
Arginine deiminase (EC 3.5.3.6)
arcB
Ornithine carbamoyltransferase (EC 2.1.3.3)

Position: -38
Score: 6.1
Sequence: TTGTGAATTATTTCACAA
Locus tag: SE0506
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -37
Score: 5.4
Sequence: TTGCGAAAAATTTCACAT
Locus tag: SE2098
Name: adhB
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
adhB
Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent

Position: -104
Score: 4.9
Sequence: TTGATATTTTTTTCACAA
Locus tag: SE1176
Name: srrA
Funciton: Staphylococcal respiratory response protein SrrA
Locus tag: SE1175
Name: srrB
Funciton: Staphylococcal respiratory response protein SrrB
srrA
Staphylococcal respiratory response protein SrrA
srrB
Staphylococcal respiratory response protein SrrB

Position: -91
Score: 5.7
Sequence: TTGTGAAATGTATCACAA
Locus tag: SE2038
Name: null
Funciton: conserved hypothetical protein
conserved hypothetical protein

Position: -74
Score: 5.8
Sequence: ATGTGAAATTAATCACAT
Locus tag: SE0214
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: SE0215
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)

Position: -145
Score: 5.6
Sequence: ATGTGAATTACATCACAA
Locus tag: SE1978
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: SE1977
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: SE1976
Name: nasF
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
nasF
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -149
Score: 4.9
Sequence: ATGTTCATATTTTCACAA
Locus tag: SE1968
Name: narK
Funciton: nitrate-nitrite antiporter
narK
nitrate-nitrite antiporter

Position: -86
Score: 5.5
Sequence: TTGTGAAAAAATGTACAA
Locus tag: SE1975
Name: narG
Funciton: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Locus tag: SE1974
Name: narH
Funciton: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
Locus tag: SE1973
Name: narJ
Funciton: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
Locus tag: SE1972
Name: narI
Funciton: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
Locus tag: SE1971
Name: nreA
Funciton: control of nitrate reduction protein NreA
Locus tag: SE1970
Name: nreB
Funciton: nitrate respiration regulation two-component system, sensor histidine kinase NreB
Locus tag: SE1969
Name: nreC
Funciton: two-component response regulator NreC
narG
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
nreA
control of nitrate reduction protein NreA
nreB
nitrate respiration regulation two-component system, sensor histidine kinase NreB
nreC
two-component response regulator NreC
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