Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CymR in Staphylococcus epidermidis ATCC 12228

Properties
Regulator type: Transcription factor
TF locus tag: SE1308
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Regulog: CymR - Staphylococcaceae
Statistics of regulated genes:
- Genes 21
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 69 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -56
Score: 5.3
Sequence: TTATTCTTATTACATATGTCGGAATAC
Locus tag: SE2354
Name: tcyP
Funciton: L-cystine uptake protein tcyP
tcyP
L-cystine uptake protein tcyP

Position: -40
Score: 6.2
Sequence: TTATTCCGATTAGAATAATAAGAATAA
Locus tag: SE1993
Name: tcyA
Funciton: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA
Locus tag: SE1992
Name: tcyB
Funciton: L-cystine uptake ABC transporter, permease protein TcyB
Locus tag: SE1991
Name: tcyC
Funciton: L-cystine uptake ABC transporter, ATP-binding protein TcyC
tcyA
L-cystine uptake ABC transporter, L-cystine-binding protein TcyA
tcyB
L-cystine uptake ABC transporter, permease protein TcyB
tcyC
L-cystine uptake ABC transporter, ATP-binding protein TcyC

Position: -65
Score: 4.4
Sequence: TAAAGTCGAGTGTTAAACTATGAATAA
Locus tag: SE1858
Name: SA2080
Funciton: putative acyl-CoA dehydrogenase
SA2080
putative acyl-CoA dehydrogenase

Position: -35
Score: 4.6
Sequence: AATACCTTAGTATTTATATCGGAAAAG
Locus tag: SE1646
Name: SA1850
Funciton: putative transporter for thiosulphate
SA1850
putative transporter for thiosulphate

Position: -42
Score: 5.3
Sequence: ATATTCAGATAATTTTAATCGGAAATT
Locus tag: SE2322
Name: metN2
Funciton: methionine ABC transporter paralog, ATP-binding protein MetN2
Locus tag: SE2321
Name: metP2
Funciton: methionine ABC transporter paralog, permease protein MetP2
Locus tag: SE2320
Name: metQ2
Funciton: methionine ABC transporter paralog, substrate-binding protein MetQ2
metN2
methionine ABC transporter paralog, ATP-binding protein MetN2
metP2
methionine ABC transporter paralog, permease protein MetP2
metQ2
methionine ABC transporter paralog, substrate-binding protein MetQ2

Position: -182
Score: 5.6
Sequence: TAATTATTACTTATTTTATCGGATTTA
Locus tag: SE1732
Name: luxS
Funciton: S-ribosylhomocysteinase
luxS
S-ribosylhomocysteinase

Position: -96
Score: 5.7
Sequence: TAATTCATATCTGATAAGTAAGAATTA
Locus tag: SE2324
Name: mccA
Funciton: cystathionine beta-synthase
Locus tag: SE2323
Name: mccB
Funciton: cystathionine gamma-lyase
mccA
cystathionine beta-synthase
mccB
cystathionine gamma-lyase

Position: -58
Score: 4.8
Sequence: TATATCCGATAGAAAAACTAAGTATTG
Locus tag: SE2270
Name: cysK
Funciton: cysteine synthase
cysK
cysteine synthase

Position: -273
Score: 4.7
Sequence: CAAAACATAGTATTCCGATAAGAAATA
Locus tag: SE2180
Name: cysJ
Funciton: sulfite reductase [NADPH] flavoprotein, alpha-component
Locus tag: SE2179
Name: cysI
Funciton: sulfite reductase (NADPH) hemoprotein, beta-component
Locus tag: SE2178
Name: cysG
Funciton: uroporphyrin-III C-methyltransferase
Locus tag: SE2177
Name: sirC
Funciton: Precorrin-2 dehydrogenase
Locus tag: SE2176
Name: ytnM
Funciton: conserved membrane protein YtnM
Locus tag: SE2175
Name: cysD
Funciton: sulfate adenylyltransferase
Locus tag: SE2174
Name: cysC
Funciton: adenylylsulfate kinase
cysJ
sulfite reductase [NADPH] flavoprotein, alpha-component
cysI
sulfite reductase (NADPH) hemoprotein, beta-component
cysG
uroporphyrin-III C-methyltransferase
sirC
Precorrin-2 dehydrogenase
ytnM
conserved membrane protein YtnM
cysD
sulfate adenylyltransferase
cysC
adenylylsulfate kinase

Position: -68
Score: 5
Sequence: TTATTCTGACAATTCTGATATGTTTTG
Locus tag: SE2181
Name: cysH
Funciton: phosphoadenosine phosphosulfate reductase
cysH
phosphoadenosine phosphosulfate reductase
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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