Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of GguR in Pseudomonas mendocina ymp

Properties
Regulator type: Transcription factor
TF locus tag: Pmen_3305
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization
Effector:
Regulog: GguR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 17
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -275
Score: 5.1
Sequence: ATGTTGTCGTATGACCT
Position: -76
Score: 4.7
Sequence: TTGTTGTACGATAACGT
Locus tag: Pmen_1215
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Pmen_1216
Name: gudD
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Pmen_1217
Name: garP
Funciton: D-galactarate permease
Locus tag: Pmen_1218
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Pmen_1219
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
kdgD
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
gudD
Glucarate dehydratase (EC 4.2.1.40)
garP
D-galactarate permease
garD
D-galactarate dehydratase (EC 4.2.1.42)
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)

Position: -316
Score: 4.8
Sequence: ACGTTGTCATACAACTT
Position: -60
Score: 5
Sequence: AAGTCATACGACAACGT
Locus tag: Pmen_3299
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Pmen_3300
Name: uxuL
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Pmen_3301
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Pmen_3302
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Pmen_3303
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Pmen_3304
Name: PF00892
Funciton: Drug/metabolite transporter
udh
Uronate dehydrogenase (EC 1.1.1.203)
uxuL
Predicted glucuronolactone/galactarolactone lactonase
uxuP
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
PF00892
Drug/metabolite transporter

Position: -63
Score: 4.8
Sequence: GTGTCATCGTACAACTG
Locus tag: Pmen_3305
Name: gguR
Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
gguR
Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Position: -450
Score: 4.7
Sequence: ACGTTATCGTACAACAA
Position: -251
Score: 5.1
Sequence: AGGTCATACGACAACAT
Locus tag: Pmen_1214
Name: gudD2
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Pmen_1213
Name: tctC
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Pmen_1212
Name: tctB
Funciton: Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates
Locus tag: Pmen_1211
Name: tctA
Funciton: Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates
gudD2
Glucarate dehydratase (EC 4.2.1.40)
tctC
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
tctB
Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates
tctA
Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates

Position: -54
Score: 4.8
Sequence: CAGTTGTACGATGACAC
Locus tag: Pmen_3306
Name: aldE
Funciton: Aldose 1-epimerase (EC 5.1.3.3)
aldE
Aldose 1-epimerase (EC 5.1.3.3)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD