Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of Rex in Rhodococcus opacus B4

Properties
Regulator type: Transcription factor
TF locus tag: ROP_17260
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Nocardiaceae
Statistics of regulated genes:
- Genes 35
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 22 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -40
Score: 5.4
Sequence: TTGTGACAGCCATCACAA
Locus tag: ROP_25550
Name: dhaS
Funciton: Acetaldehyde dehydrogenase (EC 1.2.1.10)
Locus tag: ROP_25560
Name: adhB
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
dhaS
Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhB
Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent

Position: -71
Score: 5.9
Sequence: TTGTGGCAGTTGTCACAA
Locus tag: ROP_62610
Name: choD
Funciton: Cholesterol oxidase (EC 1.1.3.6)
choD
Cholesterol oxidase (EC 1.1.3.6)

Position: -9
Score: 5.2
Sequence: CTGTGACTGGTGTCACAA
Locus tag: ROP_17430
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC: 6.2.1.3 )
Locus tag: ROP_17420
Name: gpm
Funciton: Phosphoglycerate mutase (EC 5.4.2.1)
fadD
Long-chain-fatty-acid--CoA ligase (EC: 6.2.1.3 )
gpm
Phosphoglycerate mutase (EC 5.4.2.1)

Position: -17
Score: 4.4
Sequence: TTGTGAGGTAGGTCACAA
Locus tag: ROP_52770
Name: coxM
Funciton: Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)
Locus tag: ROP_52780
Name: coxS
Funciton: Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)
Locus tag: ROP_52790
Name: coxL
Funciton: Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )
Locus tag: ROP_52800
Name: coxF
Funciton: Carbon monoxide dehydrogenase F protein
Locus tag: ROP_52810
Name: coxD
Funciton: Carbon monoxide dehydrogenase D protein
Locus tag: ROP_52820
Name: coxG
Funciton: Carbon monoxide dehydrogenase G protein
Locus tag: ROP_52830
Name: coxE
Funciton: Carbon monoxide dehydrogenase E protein
coxM
Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)
coxS
Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)
coxL
Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )
coxF
Carbon monoxide dehydrogenase F protein
coxD
Carbon monoxide dehydrogenase D protein
coxG
Carbon monoxide dehydrogenase G protein
coxE
Carbon monoxide dehydrogenase E protein

Position: -215
Score: 4.7
Sequence: CTGTGATCGGGTTCACAA
Locus tag: ROP_12860
Name: pntAa
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: ROP_12850
Name: pntAb
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: ROP_12840
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
pntAa
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
pntAb
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)

Position: -164
Score: 5.8
Sequence: TTGTGCATGGGTTCACAA
Locus tag: ROP_17260
Name: rex
Funciton: Redox-sensitive transcriptional regulator Rex
Locus tag: ROP_17250
Name: hemA
Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: ROP_17240
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: ROP_17230
Name: hemD
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: ROP_17220
Name: hemB
Funciton: Porphobilinogen synthase (EC 4.2.1.24)
rex
Redox-sensitive transcriptional regulator Rex
hemA
Glutamyl-tRNA reductase (EC 1.2.1.70)
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
hemD
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
hemB
Porphobilinogen synthase (EC 4.2.1.24)

Position: -88
Score: 3.9
Sequence: CTGTGGCATAACTCACAA
Locus tag: ROP_59710
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: ROP_59720
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: ROP_59730
Name: nuoC
Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: ROP_59740
Name: nuoD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: ROP_59750
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: ROP_59760
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: ROP_59770
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: ROP_59780
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: ROP_59790
Name: nuoI
Funciton: NADH-quinone oxidoreductase chain I
Locus tag: ROP_59800
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: ROP_59810
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: ROP_59820
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: ROP_59830
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: ROP_59840
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
nuoC
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
nuoD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
nuoI
NADH-quinone oxidoreductase chain I
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)

Position: -103
Score: 6.3
Sequence: TCGTGAAAGCATTCACAA
Locus tag: ROP_64060
Name: whiB
Funciton: WhiB-family transcriptional regulator involved in differentiation and sporulation
whiB
WhiB-family transcriptional regulator involved in differentiation and sporulation
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