Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of GguR in Variovorax paradoxus S110

Properties
Regulator type: Transcription factor
TF locus tag: Vapar_1727
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Regulog: GguR - Comamonadaceae
Statistics of regulated genes:
- Genes 15
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -39
Score: 5.1
Sequence: CTGTTGTCGTACAACTA
Locus tag: Vapar_1727
Name: gguR
Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
gguR
Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Position: -39
Score: 5.1
Sequence: TAGTTGTACGACAACAG
Locus tag: Vapar_1726
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Vapar_1725
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Vapar_1724
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Vapar_1723
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Vapar_1722
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Vapar_1721
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Vapar_1720
Name: null
Funciton: short-chain dehydrogenase/reductase SDR
Locus tag: Vapar_1719
Name: null
Funciton: hypothetical protein
Locus tag: Vapar_1718
Name: uxuF
Funciton: Predicted uronate lactonase, PF10282 family
Locus tag: Vapar_1717
Name: tctC2
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
udh
Uronate dehydrogenase (EC 1.1.1.203)
uxuL1
Predicted glucuronolactone/galactarolactone lactonase
uxuP
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
garD
D-galactarate dehydratase (EC 4.2.1.42)
short-chain dehydrogenase/reductase SDR
hypothetical protein
uxuF
Predicted uronate lactonase, PF10282 family
tctC2
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates

Position: -44
Score: 4.6
Sequence: TAGTTGTACGATGACTG
Position: -37
Score: 4.2
Sequence: ACGATGACTGACAACAC
Locus tag: Vapar_1728
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Vapar_1729
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Vapar_1730
Name: null
Funciton: hypothetical protein
Locus tag: Vapar_1731
Name: gudD
Funciton: Glucarate dehydratase (EC 4.2.1.40)
tctC1
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
kdgD
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
hypothetical protein
gudD
Glucarate dehydratase (EC 4.2.1.40)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD