Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of GguR in Leptothrix cholodnii SP-6

Properties
Regulator type: Transcription factor
TF locus tag: Lcho_1116
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Regulog: GguR - Comamonadaceae
Statistics of regulated genes:
- Genes 14
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -73
Score: 5.4
Sequence: CAGTTGTCGTACAACGT
Locus tag: Lcho_1116
Name: gguR
Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
gguR
Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Position: -95
Score: 5.4
Sequence: ACGTTGTACGACAACTG
Locus tag: Lcho_1115
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Lcho_1114
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Lcho_1113
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Lcho_1112
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Lcho_1111
Name: uxuL2
Funciton: Predicted glucuronolactone/galactarolactone lactonase
udh
Uronate dehydrogenase (EC 1.1.1.203)
uxuP
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
uxuL2
Predicted glucuronolactone/galactarolactone lactonase

Position: -65
Score: 5.1
Sequence: ATGTTGTACGATGACAT
Position: -58
Score: 4.4
Sequence: ACGATGACATACAACAT
Locus tag: Lcho_1117
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Lcho_1118
Name: gudD
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Lcho_1119
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Lcho_1120
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Lcho_1121
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Lcho_1122
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Lcho_1123
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
kdgD
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
gudD
Glucarate dehydratase (EC 4.2.1.40)
kgsD
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
tctC1
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
garL
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
garR
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)

Position: -217
Score: 4.1
Sequence: TTGTTGTACGTCATCGT
Position: -210
Score: 4.8
Sequence: ACGTCATCGTATAACTT
Position: -66
Score: 5.7
Sequence: ATGTTGTACGACAACAT
Locus tag: Lcho_2484
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
garD
D-galactarate dehydratase (EC 4.2.1.42)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD