Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of SdhR in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type: Transcription factor
TF locus tag: Rfer_1802
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes 12
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 36 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -23
Score: 6.7
Sequence: TCTTATGTCTTATATAAGATAAGATG
Locus tag: Rfer_1802
Name: sdhR
Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Rfer_1801
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Rfer_1800
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Rfer_1799
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Rfer_1798
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Rfer_1797
Name: COG2938
Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Rfer_1796
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
sdhR
Transcriptional regulator of TCA cycle, GntR family
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938
succinate dehydrogenase iron-sulfur subunit
gltA
Citrate synthase (si) (EC 2.3.3.1)

Position: -138
Score: 6.7
Sequence: CATCTTATCTTATATAAGACATAAGA
Locus tag: Rfer_1803
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Rfer_1804
Name: null
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Locus tag: Rfer_1805
Name: Aave_2209
Funciton: hypothetical protein
Locus tag: Rfer_1806
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
mdh
Malate dehydrogenase (EC 1.1.1.37)
Citrate lyase beta chain (EC 4.1.3.6)
Aave_2209
hypothetical protein
acnB
Aconitate hydratase (EC 4.2.1.3)

Position: -124
Score: 6.7
Sequence: AAAAATGTCTTCTATAAGACATAAGA
Position: -94
Score: 5.3
Sequence: TTTTTAGTCTTATACAAGACCTAAAA
Locus tag: Rfer_1335
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
aceA
Isocitrate lyase (EC 4.1.3.1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD