Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of MdcY in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type: Transcription factor
TF locus tag: Rfer_1839
Regulator family: GntR/Others
Regulation mode:
Biological process: Malonate metabolism
Effector:
Regulog: MdcY - Comamonadaceae
Statistics of regulated genes:
- Genes 11
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -90
Score: 4.6
Sequence: ATGTATACAT
Position: -25
Score: 3.8
Sequence: TTGCATACCA
Locus tag: Rfer_1839
Name: mdcY
Funciton: Transcriptional regulator of malonate metabolism, GntR family
mdcY
Transcriptional regulator of malonate metabolism, GntR family

Position: -160
Score: 3.8
Sequence: TGGTATGCAA
Position: -95
Score: 4.6
Sequence: ATGTATACAT
Locus tag: Rfer_1840
Name: matP
Funciton: TRAP malonate transporter, periplasmic subunit
Locus tag: Rfer_1841
Name: matQ
Funciton: TRAP malonate transporter, small permease subunit
Locus tag: Rfer_1842
Name: matM
Funciton: TRAP malonate transporter, large permease subunit
Locus tag: Rfer_1843
Name: mdcA
Funciton: Malonate decarboxylase, alpha subunit
Locus tag: Rfer_1844
Name: mdcC
Funciton: Malonate decarboxylase delta subunit, acyl-carrier protein
Locus tag: Rfer_1845
Name: mdcD
Funciton: Malonate decarboxylase, beta subunit
Locus tag: Rfer_1846
Name: mdcE
Funciton: Malonate decarboxylase gamma subunit
Locus tag: Rfer_1847
Name: mdcG
Funciton: holo-ACP synthase, malonate decarboxylase-specific
Locus tag: Rfer_1848
Name: mdcB
Funciton: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
Locus tag: Rfer_1849
Name: mdcH
Funciton: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
matP
TRAP malonate transporter, periplasmic subunit
matQ
TRAP malonate transporter, small permease subunit
matM
TRAP malonate transporter, large permease subunit
mdcA
Malonate decarboxylase, alpha subunit
mdcC
Malonate decarboxylase delta subunit, acyl-carrier protein
mdcD
Malonate decarboxylase, beta subunit
mdcE
Malonate decarboxylase gamma subunit
mdcG
holo-ACP synthase, malonate decarboxylase-specific
mdcB
Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcH
Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD