Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of UxuR2 in Verminephrobacter eiseniae EF01-2

Properties
Regulator type: Transcription factor
TF locus tag: Veis_1542, Veis_0743
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Regulog: UxuR2 - Comamonadaceae
Statistics of regulated genes:
- Genes 20
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -62
Score: 5.1
Sequence: GAATTGGCCTTACCAATTT
Locus tag: Veis_1542
Name: uxuR2
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Veis_1541
Name: dctP
Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Veis_1540
Name: dctP
Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Veis_1539
Name: dctQ
Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Veis_1538
Name: dctM
Funciton: TRAP-type C4-dicarboxylate transport system, large permease component
Locus tag: Veis_1537
Name: uxaA
Funciton: Altronate/Galactarate hydrolase (EC 4.2.1.7)
uxuR2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctP
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctQ
TRAP-type C4-dicarboxylate transport system, small permease component
dctM
TRAP-type C4-dicarboxylate transport system, large permease component
uxaA
Altronate/Galactarate hydrolase (EC 4.2.1.7)

Position: -25
Score: 5.3
Sequence: TAATTGGTCTATCCAATTT
Locus tag: Veis_3567
Name: uxuR3
Funciton: Predicted transcriptional regulator for glucuronate utilization, GntR family
Locus tag: Veis_3566
Name: Vapar_2878
Funciton: Amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: Veis_3565
Name: idnD/tdh
Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264)
Locus tag: Veis_3564
Name: Vapar_2880
Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Veis_3563
Name: Vapar_2881
Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Veis_3562
Name: Vapar_2882
Funciton: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: Veis_3561
Name: Bpro_3978
Funciton: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Locus tag: Veis_3560
Name: mtlD
Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
Locus tag: Veis_3559
Name: Pnap_1486
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
uxuR3
Predicted transcriptional regulator for glucuronate utilization, GntR family
Vapar_2878
Amino acid ABC transporter, periplasmic amino acid-binding protein
idnD/tdh
L-idonate 5-dehydrogenase (EC 1.1.1.264)
Vapar_2880
Amino acid ABC transporter, inner membrane subunit
Vapar_2881
Amino acid ABC transporter, inner membrane subunit
Vapar_2882
Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bpro_3978
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
mtlD
D-mannonate oxidoreductase (EC 1.1.1.57)
Pnap_1486
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)

Position: -38
Score: 4.9
Sequence: CGATTGGCCTGACCATTGA
Locus tag: Veis_0743
Name: uxuR2-3
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Veis_0744
Name: argE
Funciton: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
Locus tag: Veis_0745
Name: ddpA
Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Locus tag: Veis_0746
Name: dppB
Funciton: Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: Veis_0747
Name: dppC
Funciton: Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
uxuR2-3
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
argE
Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
ddpA
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
dppB
Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
dppC
Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD