Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of UxuR2 in Variovorax paradoxus S110

Properties
Regulator type: Transcription factor
TF locus tag: Vapar_5316, Vapar_0787
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Regulog: UxuR2 - Comamonadaceae
Statistics of regulated genes:
- Genes 25
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -52
Score: 5
Sequence: GAATTGGCCTTACCACTTG
Locus tag: Vapar_0787
Name: uxuR2
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Vapar_0786
Name: dctP
Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Vapar_0785
Name: dctQ
Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Vapar_0784
Name: dctM
Funciton: TRAP-type C4-dicarboxylate transport system, large permease component
Locus tag: Vapar_0783
Name: uxaA
Funciton: Altronate/Galactarate hydrolase (EC 4.2.1.7)
uxuR2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctQ
TRAP-type C4-dicarboxylate transport system, small permease component
dctM
TRAP-type C4-dicarboxylate transport system, large permease component
uxaA
Altronate/Galactarate hydrolase (EC 4.2.1.7)

Position: -157
Score: 4.7
Sequence: GATCTGGTCATGCCAGTTT
Position: -42
Score: 4.7
Sequence: AAAGTGGCCTCGCCAAATT
Position: -28
Score: 5.1
Sequence: AAATTGGTAAGGCCAAAAG
Locus tag: Vapar_5317
Name: null
Funciton: amidohydrolase 2
Locus tag: Vapar_5318
Name: Rfer_3129
Funciton: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
Locus tag: Vapar_5319
Name: Rfer_3130
Funciton: Possible fucose ABC transporter, permease component
Locus tag: Vapar_5320
Name: Rfer_3131
Funciton: Possible fucose ABC transporter, substrate-binding component
Locus tag: Vapar_5321
Name: Rfer_3134
Funciton: L-fuconate dehydratase (EC 4.2.1.68)
Locus tag: Vapar_5322
Name: Rfer_3136
Funciton: SDR dehydrogenase clustered with L-fuconate utilization genes
Locus tag: Vapar_5323
Name: Rfer_3138
Funciton: Possible alternative L-fucose mutarotase
amidohydrolase 2
Rfer_3129
ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
Rfer_3130
Possible fucose ABC transporter, permease component
Rfer_3131
Possible fucose ABC transporter, substrate-binding component
Rfer_3134
L-fuconate dehydratase (EC 4.2.1.68)
Rfer_3136
SDR dehydrogenase clustered with L-fuconate utilization genes
Rfer_3138
Possible alternative L-fucose mutarotase

Position: -165
Score: 5.1
Sequence: CTTTTGGCCTTACCAATTT
Position: -151
Score: 4.7
Sequence: AATTTGGCGAGGCCACTTT
Position: -36
Score: 4.7
Sequence: AAACTGGCATGACCAGATC
Locus tag: Vapar_5316
Name: uxuR2-2
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
uxuR2-2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family

Position: -27
Score: 5.2
Sequence: AATGTGGTCTAACCAATTT
Locus tag: Vapar_2876
Name: uxuR3
Funciton: Predicted transcriptional regulator for glucuronate utilization, GntR family
Locus tag: Vapar_2877
Name: Aave_2470
Funciton: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
Locus tag: Vapar_2878
Name: Vapar_2878
Funciton: Amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: Vapar_2879
Name: idnD/tdh
Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264)
Locus tag: Vapar_2880
Name: Vapar_2880
Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Vapar_2881
Name: Vapar_2881
Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Vapar_2882
Name: Vapar_2882
Funciton: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: Vapar_2883
Name: Bpro_3978
Funciton: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Locus tag: Vapar_2884
Name: mtlD
Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
uxuR3
Predicted transcriptional regulator for glucuronate utilization, GntR family
Aave_2470
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
Vapar_2878
Amino acid ABC transporter, periplasmic amino acid-binding protein
idnD/tdh
L-idonate 5-dehydrogenase (EC 1.1.1.264)
Vapar_2880
Amino acid ABC transporter, inner membrane subunit
Vapar_2881
Amino acid ABC transporter, inner membrane subunit
Vapar_2882
Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bpro_3978
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
mtlD
D-mannonate oxidoreductase (EC 1.1.1.57)

Position: -104
Score: 5
Sequence: CAAGTGGTAAGGCCAATTC
Locus tag: Vapar_0788
Name: Bpro_3961
Funciton: 2-keto-3-deoxy-L-fuconate dehydrogenase
Locus tag: Vapar_0789
Name: Bpro_3960
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Vapar_0790
Name: mhpD
Funciton: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
Bpro_3961
2-keto-3-deoxy-L-fuconate dehydrogenase
Bpro_3960
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
mhpD
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
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