Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of UxuR2 in Polaromonas sp. JS666

Properties
Regulator type: Transcription factor
TF locus tag: Bpro_3963
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Regulog: UxuR2 - Comamonadaceae
Statistics of regulated genes:
- Genes 18
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -198
Score: 4
Sequence: AGTTTGGTCTAACCAGCAA
Locus tag: Bpro_3977
Name: uxuR3
Funciton: Predicted transcriptional regulator for glucuronate utilization, GntR family
Locus tag: Bpro_3978
Name: Bpro_3978
Funciton: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
uxuR3
Predicted transcriptional regulator for glucuronate utilization, GntR family
Bpro_3978
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein

Position: -131
Score: 5.5
Sequence: CAAGTGGTAAGGCCAATTG
Locus tag: Bpro_3962
Name: COG4948
Funciton: Muconate cycloisomerase (EC 5.5.1.1)
Locus tag: Bpro_3961
Name: Bpro_3961
Funciton: 2-keto-3-deoxy-L-fuconate dehydrogenase
Locus tag: Bpro_3960
Name: Bpro_3960
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Bpro_3959
Name: mhpD
Funciton: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
COG4948
Muconate cycloisomerase (EC 5.5.1.1)
Bpro_3961
2-keto-3-deoxy-L-fuconate dehydrogenase
Bpro_3960
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
mhpD
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)

Position: 30
Score: 5.5
Sequence: CAATTGGCCTTACCACTTG
Locus tag: Bpro_3963
Name: uxuR2
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Bpro_3964
Name: dctP
Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Bpro_3965
Name: dctQ
Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Bpro_3966
Name: dctM
Funciton: TRAP-type C4-dicarboxylate transport system, large permease component
Locus tag: Bpro_3967
Name: uxaA
Funciton: Altronate/Galactarate hydrolase (EC 4.2.1.7)
uxuR2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctQ
TRAP-type C4-dicarboxylate transport system, small permease component
dctM
TRAP-type C4-dicarboxylate transport system, large permease component
uxaA
Altronate/Galactarate hydrolase (EC 4.2.1.7)

Position: -161
Score: 4
Sequence: TTGCTGGTTAGACCAAACT
Locus tag: Bpro_3976
Name: null
Funciton: ABC transporter amino acid-binding protein
Locus tag: Bpro_3975
Name: null
Funciton: amino acid ABC transporter, permease protein
Locus tag: Bpro_3974
Name: null
Funciton: amino acid ABC transporter, permease protein
Locus tag: Bpro_3973
Name: null
Funciton: Glutamine transport ATP-binding protein glnQ
Locus tag: Bpro_3972
Name: COG2055
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Bpro_3971
Name: COG2706
Funciton: 3-carboxymuconate cyclase
Locus tag: Bpro_3970
Name: uxuA
Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
ABC transporter amino acid-binding protein
amino acid ABC transporter, permease protein
amino acid ABC transporter, permease protein
Glutamine transport ATP-binding protein glnQ
COG2055
Malate dehydrogenase (EC 1.1.1.37)
COG2706
3-carboxymuconate cyclase
uxuA
D-mannonate oxidoreductase (EC 1.1.1.57)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD