Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Frankia sp. CcI3

Properties
Regulator type: Transcription factor
TF locus tag: Francci3_3510
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Frankineae/Propionibacterineae/Pseudonocardiaceae
Statistics of regulated genes:
- Genes 12
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 68 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -267
Score: 5
Sequence: TCGAACCTTCGTTCGA
Position: -251
Score: 5.3
Sequence: TCGAACGCGTGGTCGA
Position: -198
Score: 5.4
Sequence: TCGAACAGACGTTTGA
Locus tag: Francci3_3510
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -22
Score: 4.9
Sequence: TCGAACGTACGATCGG
Locus tag: Francci3_0647
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: -197
Score: 5
Sequence: CCGAACACATGGTCGA
Position: 28
Score: 5.6
Sequence: TCGAACACATGTTCGG
Locus tag: Francci3_0067
Name: PF02720
Funciton: HNH endonuclease
PF02720
HNH endonuclease

Position: -268
Score: 4.1
Sequence: CCGAGCGGGCATTCGA
Locus tag: Francci3_3584
Name: dprA
Funciton: DNA protecting protein DprA
Locus tag: Francci3_3583
Name: xerC
Funciton: Site-specific DNA-tyrosine recombinase, XerC
dprA
DNA protecting protein DprA
xerC
Site-specific DNA-tyrosine recombinase, XerC

Position: -139
Score: 5.4
Sequence: TCGAACGCATGTTCGT
Locus tag: Francci3_3525
Name: recA
Funciton: Recombinase A
Locus tag: Francci3_3524
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -50
Score: 5.3
Sequence: ACGAACATACGTTCGA
Locus tag: Francci3_4518
Name: dnaB
Funciton: Replicative DNA helicase (EC 3.6.1.-)
dnaB
Replicative DNA helicase (EC 3.6.1.-)

Position: -233
Score: 3.7
Sequence: GAGAACGGCAGTACGA
Locus tag: Francci3_0194
Name: hsdR
Funciton: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)
hsdR
Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)

Position: -40
Score: 4.5
Sequence: TCGAACGAATGTTCTT
Locus tag: Francci3_1369
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Francci3_1370
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Francci3_1371
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD