Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Listeria innocua Clip11262

Properties
Regulator type: Transcription factor
TF locus tag: lin1340
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Listeriaceae
Statistics of regulated genes:
- Genes 25
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 48 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -57
Score: 4.7
Sequence: TGATGCGAACGTAGGTTCTGTGTT
Locus tag: lin0195
Name: srmB
Funciton: DinG family ATP-dependent helicase CPE1197
Locus tag: lin0196
Name: yxeH
Funciton: Cof-like hydrolase
srmB
DinG family ATP-dependent helicase CPE1197
yxeH
Cof-like hydrolase

Position: -47
Score: 4.6
Sequence: AAAAGGGAACGTATGTTTTATGAT
Locus tag: lin1681
Name: lin1681
Funciton: Conserved hypothetical protein
Locus tag: lin1680
Name: tag
Funciton: DNA-3-methyladenine glycosylase (EC 3.2.2.20)
Locus tag: lin1679
Name: lin1679
Funciton: Putative carboxypeptidase
lin1681
Conserved hypothetical protein
tag
DNA-3-methyladenine glycosylase (EC 3.2.2.20)
lin1679
Putative carboxypeptidase

Position: -73
Score: 5.5
Sequence: AAACAAGAACGTTTGTTCGTATAA
Locus tag: lin2822
Name: lmo2675
Funciton: Conserved hypothetical protein
Locus tag: lin2823
Name: uvrX
Funciton: Predicted UV-damage repair protein UvrX
lmo2675
Conserved hypothetical protein
uvrX
Predicted UV-damage repair protein UvrX

Position: -163
Score: 6.1
Sequence: GAATACGAAAATATGTTCGGTTTT
Locus tag: lin2632
Name: uvrB
Funciton: Excinuclease ABC, subunit B
Locus tag: lin2631
Name: uvrA
Funciton: Excinuclease ABC, subunit A
uvrB
Excinuclease ABC, subunit B
uvrA
Excinuclease ABC, subunit A

Position: -142
Score: 6.3
Sequence: AAATACGAATAAATGTTCGCTTTT
Locus tag: lin1435
Name: recA
Funciton: DNA recombinase A
recA
DNA recombinase A

Position: -144
Score: 6
Sequence: AAAAAAGAATGTACGTTCGCTTTT
Position: -84
Score: 5.6
Sequence: AAAAACGAACCTTTGTTTGCATAT
Locus tag: lin1340
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: lin1339
Name: guaA
Funciton: Probable GMP synthase
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
guaA
Probable GMP synthase

Position: -30
Score: 5.8
Sequence: AAATAAAAACATATGTTCGGTGGT
Locus tag: lin2369
Name: addB
Funciton: ATP-dependent nuclease, subunit B
Locus tag: lin2368
Name: addA
Funciton: ATP-dependent nuclease, subunit A
Locus tag: lin2367
Name: yisK
Funciton: Conserved hypothetical protein
Locus tag: lin2366
Name: PF07457
Funciton: Conserved hypothetical protein
addB
ATP-dependent nuclease, subunit B
addA
ATP-dependent nuclease, subunit A
yisK
Conserved hypothetical protein
PF07457
Conserved hypothetical protein

Position: -42
Score: 5.9
Sequence: TAATAAGAACGTATATTCGGTTTT
Locus tag: lin2325
Name: yhaO
Funciton: Predicted DNA double-strand break repair protein
Locus tag: lin2324
Name: yhaN
Funciton: Putative DNA double-strand break repair ATPase
Locus tag: lin2323
Name: yhaM
Funciton: Predicted 3'-5' exoribonuclease
yhaO
Predicted DNA double-strand break repair protein
yhaN
Putative DNA double-strand break repair ATPase
yhaM
Predicted 3'-5' exoribonuclease

Position: -38
Score: 5.5
Sequence: GAATAAGAACGCTTGTTCGTTTTA
Locus tag: lin2082
Name: dinP
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinP
DNA polymerase IV (EC 2.7.7.7)

Position: -75
Score: 5.6
Sequence: AAACGCGAACACACTTTCTTTTTT
Locus tag: lin1609
Name: dnaE
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
dnaE
DNA polymerase III alpha subunit (EC 2.7.7.7)

Position: -44
Score: 5.8
Sequence: AAATAAGAACAAATGTTTGTATGG
Locus tag: lin1871
Name: pcrA
Funciton: ATP-dependent DNA helicase UvrD/PcrA
Locus tag: lin1870
Name: ligA
Funciton: DNA ligase (EC 6.5.1.2)
Locus tag: lin1869
Name: yerH
Funciton: Putative lipoprotein
pcrA
ATP-dependent DNA helicase UvrD/PcrA
ligA
DNA ligase (EC 6.5.1.2)
yerH
Putative lipoprotein

Position: -33
Score: 4.6
Sequence: AAAAAAGAACGTATGTGCGAAAGG
Locus tag: lin2426
Name: int
Funciton: Integrase
int
Integrase
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD