Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of IscR in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_2872
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron-sulfur cluster biogenesis
Effector: Iron-sulfur cluster redox state
Regulog: IscR - Shewanellaceae
Statistics of regulated genes:
- Genes 11
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 93 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -64
Score: 5.5
Sequence: TTACTTGAACAAAATGGTCAGGTAT
Locus tag: Ssed_1095
Name: erpA
Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
erpA
ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family

Position: -47
Score: 4.3
Sequence: AATCCATACTAAAACACTCAAGCAT
Locus tag: Ssed_0179
Name: nfuA
Funciton: NfuA Fe-S protein maturation
nfuA
NfuA Fe-S protein maturation

Position: -98
Score: 5.6
Sequence: ATTCCTGAGCAATTTAGTCAAGTTT
Locus tag: Ssed_4124
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN or NorA
dnrN
Nitric oxide-dependent regulator DnrN or NorA

Position: -161
Score: 4.5
Sequence: ATACCCCACCAAAGTGGCAGGGTAT
Position: -63
Score: 6.4
Sequence: ATACTTGACTAAAATAGTCGGGTAT
Locus tag: Ssed_2872
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: Ssed_2871
Name: iscS
Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
Locus tag: Ssed_2870
Name: iscU
Funciton: Iron-sulfur cluster assembly scaffold protein IscU
Locus tag: Ssed_2869
Name: iscA
Funciton: Iron binding protein IscA for iron-sulfur cluster assembly
Locus tag: Ssed_2868
Name: hscB
Funciton: Chaperone protein HscB
Locus tag: Ssed_2867
Name: hscA
Funciton: Chaperone protein HscA
Locus tag: Ssed_2866
Name: fdx
Funciton: ferredoxin, 2Fe-2S type, ISC system
iscR
Iron-sulfur cluster regulator IscR
iscS
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
iscU
Iron-sulfur cluster assembly scaffold protein IscU
iscA
Iron binding protein IscA for iron-sulfur cluster assembly
hscB
Chaperone protein HscB
hscA
Chaperone protein HscA
fdx
ferredoxin, 2Fe-2S type, ISC system

Position: -125
Score: 5.4
Sequence: GTACCTTAGTAATTTACTAGGGTAT
Locus tag: Ssed_4199
Name: ygbA
Funciton: hypothetical protein involved in nitrosative stress
ygbA
hypothetical protein involved in nitrosative stress
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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