Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of AlgR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_3102
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Alginate utilization
Effector: Glucuronate; Galacturonate
Regulog: AlgR - Shewanellaceae
Statistics of regulated genes:
- Genes 6
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -673
Score: 5.6
Sequence: TAATTGGTAAAACAATTT
Locus tag: Sfri_3103
Name: algL1
Funciton: Alginate lyase precursor (EC 4.2.2.3)
Locus tag: Sfri_3104
Name: algL2
Funciton: poly(beta-D-mannuronate) lyase (EC 4.2.2.3)
Locus tag: Sfri_3105
Name: kdgF
Funciton: Pectin degradation protein KdgF
Locus tag: Sfri_3106
Name: algT
Funciton: Predicted mannuronate transporter
Locus tag: Sfri_3107
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
algL1
Alginate lyase precursor (EC 4.2.2.3)
algL2
poly(beta-D-mannuronate) lyase (EC 4.2.2.3)
kdgF
Pectin degradation protein KdgF
algT
Predicted mannuronate transporter
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)

Position: -192
Score: 5.6
Sequence: AAATTGTTTTACCAATTA
Locus tag: Sfri_3102
Name: algR
Funciton: Alginate utilization operon transcriptional repressor, AlgR
algR
Alginate utilization operon transcriptional repressor, AlgR
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