Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_1001
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -423
Score: 3.5
Sequence: TTTGCATTCAAAACCAAG
Position: -263
Score: 4
Sequence: GTAAAATATATATTCAAA
Locus tag: Swoo_0329
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -236
Score: 4
Sequence: ATTTCATTATTAGTCATC
Position: -204
Score: 5
Sequence: TGTGAATTTCAATGCAAA
Locus tag: Swoo_1802
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -83
Score: 4.5
Sequence: TTTGAATGTTTGTTCAAA
Position: -59
Score: 3.9
Sequence: CTTGAATGATCGTTCAAA
Position: -32
Score: 4.4
Sequence: CTTGAATGAACATTCAAG
Locus tag: Swoo_4055
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -225
Score: 4.1
Sequence: TCTAAATATTTACGCATT
Position: -113
Score: 4.4
Sequence: AGTGAATAATTAGTTATT
Locus tag: Swoo_4648
Name: aprE2
Funciton: Cold-active alkaline serine protease (EC 3.4.21.62)
aprE2
Cold-active alkaline serine protease (EC 3.4.21.62)

Position: -317
Score: 4.7
Sequence: ATTGATTAGATATTCATA
Locus tag: Swoo_2092
Name: hisG
Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17)
Locus tag: Swoo_2091
Name: hisD
Funciton: Histidinol dehydrogenase (EC 1.1.1.23)
Locus tag: Swoo_2090
Name: hisC
Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9)
Locus tag: Swoo_2089
Name: hisB
Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
Locus tag: Swoo_2088
Name: hisH
Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Locus tag: Swoo_2087
Name: hisA
Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisG
ATP phosphoribosyltransferase (EC 2.4.2.17)
hisD
Histidinol dehydrogenase (EC 1.1.1.23)
hisC
Histidinol-phosphate aminotransferase (EC 2.6.1.9)
hisB
Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)

Position: -153
Score: 4.8
Sequence: ACTGCATTGTTATGCACC
Locus tag: Swoo_2082
Name: hisF
Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Locus tag: Swoo_2081
Name: hisI
Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
hisF
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)

Position: -89
Score: 4.6
Sequence: CATGAATGGATATTCAGT
Locus tag: Swoo_3520
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -245
Score: 4.2
Sequence: TATGACTAAATATGCTCT
Locus tag: Swoo_0655
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Swoo_0656
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Swoo_0657
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Swoo_0658
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -125
Score: 4.2
Sequence: TGCGCATAAAAACTCAAT
Locus tag: Swoo_0978
Name: SO0762
Funciton: Isochorismate hydrolase (EC 3.3.2.1)
SO0762
Isochorismate hydrolase (EC 3.3.2.1)

Position: -28
Score: 4
Sequence: TTTGAATATATATTTTAC
Locus tag: Swoo_0328
Name: argE
Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
argE
Acetylornithine deacetylase (EC 3.5.1.16)

Position: -349
Score: 4.7
Sequence: ACTGCATAAATAAGCAAA
Position: -314
Score: 3.9
Sequence: ATTCATTATATTTGCAAT
Locus tag: Swoo_1221
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Swoo_1220
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -598
Score: 3.9
Sequence: TGTGCATATAATTTAATC
Position: -551
Score: 4.3
Sequence: GATGAGTATATATTGATT
Locus tag: Swoo_2565
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -110
Score: 4.4
Sequence: AATGAATAAAAAGTTATT
Locus tag: Swoo_3337
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Swoo_3336
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Swoo_3335
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -95
Score: 5
Sequence: ATTGCATTCTTATTCATT
Locus tag: Swoo_1001
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -198
Score: 4.9
Sequence: TGTGAAAAAATATTCAGT
Position: -84
Score: 5.6
Sequence: AGTGAATTAAAATGCAAT
Locus tag: Swoo_4558
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -92
Score: 5
Sequence: ACTGAATTTATATTCGCT
Locus tag: Swoo_0949
Name: Swoo_0949
Funciton: Peptidase U32
Swoo_0949
Peptidase U32

Position: -240
Score: 4.2
Sequence: GTCGCATATTAATTCAGG
Locus tag: Swoo_3041
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -190
Score: 4.2
Sequence: CGTGATTATTAAATCACA
Locus tag: Swoo_0442
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Swoo_0443
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Swoo_0444
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Locus tag: Swoo_0445
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Swoo_0446
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)

Position: -51
Score: 4.9
Sequence: AGTGCATAAAGATTCATT
Locus tag: Swoo_0330
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Swoo_0331
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Swoo_0332
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Swoo_0333
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD