Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_4101
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 37
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -90
Score: 5.2
Sequence: GTTGAATGAATATTCAAT
Locus tag: swp_1256
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -151
Score: 4.5
Sequence: TATAAATATAAATGCACC
Locus tag: swp_3957
Name: SO0762
Funciton: Isochorismate hydrolase (EC 3.3.2.1)
SO0762
Isochorismate hydrolase (EC 3.3.2.1)

Position: -83
Score: 4.5
Sequence: TTTGAATGTTTGTTCAAA
Position: -59
Score: 4.8
Sequence: CTTGAATGATTATTCAAA
Position: -32
Score: 4.4
Sequence: CTTGAATGTTCATTCAAG
Locus tag: swp_0975
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -266
Score: 4.5
Sequence: CCTAAATATATATTCAAA
Locus tag: swp_2055
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -244
Score: 4
Sequence: TATGACTAAATATGCTTA
Locus tag: swp_0747
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: swp_0748
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: swp_0749
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: swp_0750
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -55
Score: 4.9
Sequence: AATGCATAAAGATTCATT
Locus tag: swp_2056
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: swp_2057
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: swp_2058
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: swp_2059
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -167
Score: 4
Sequence: ATTTCATTATTAGTCATC
Position: -135
Score: 4.6
Sequence: TGTGCATTTTGATGCAAA
Locus tag: swp_1743
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -110
Score: 3.7
Sequence: AGTGATAATAAATGCTTT
Position: -89
Score: 5.4
Sequence: ATTGCATTAAAATGCAAT
Locus tag: swp_2207
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -308
Score: 5
Sequence: GTTGAATTTTTACTCAAT
Position: -259
Score: 4
Sequence: GGTGAATATTAGTTAATT
Locus tag: swp_4207
Name: aprE2
Funciton: Cold-active alkaline serine protease (EC 3.4.21.62)
aprE2
Cold-active alkaline serine protease (EC 3.4.21.62)

Position: -292
Score: 4.4
Sequence: GATTAATTTAAATGCATC
Locus tag: swp_3001
Name: hisG
Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17)
Locus tag: swp_3003
Name: hisD
Funciton: Histidinol dehydrogenase (EC 1.1.1.23)
Locus tag: swp_3004
Name: hisC
Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9)
Locus tag: swp_3005
Name: hisB
Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
Locus tag: swp_3006
Name: hisH
Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Locus tag: swp_3007
Name: hisA
Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
Locus tag: swp_3008
Name: hisF
Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Locus tag: swp_3009
Name: hisI
Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
hisG
ATP phosphoribosyltransferase (EC 2.4.2.17)
hisD
Histidinol dehydrogenase (EC 1.1.1.23)
hisC
Histidinol-phosphate aminotransferase (EC 2.6.1.9)
hisB
Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisF
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)

Position: -143
Score: 3.4
Sequence: AATACTTAATAATTGAAC
Position: -27
Score: 4.5
Sequence: TTTGAATATATATTTAGG
Locus tag: swp_2054
Name: argE
Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
argE
Acetylornithine deacetylase (EC 3.5.1.16)

Position: -104
Score: 5
Sequence: TGTGAATACTTATTCACT
Locus tag: swp_2592
Name: SO2306
Funciton: Cell division protein FtsK
SO2306
Cell division protein FtsK

Position: -355
Score: 4.4
Sequence: TCTGCATAATTAGTCAAG
Position: -331
Score: 4.3
Sequence: AGTGACTATCATTTCACT
Position: -310
Score: 4.3
Sequence: TTTGCAATAAAAATCACT
Locus tag: swp_3803
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: swp_3804
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -612
Score: 4
Sequence: TGTGATTTTTAATGCCTC
Position: -393
Score: 3.7
Sequence: AGTTCATTTAATATCAAA
Locus tag: swp_2362
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -157
Score: 3.6
Sequence: TATCAACAGAAATGCATA
Position: -136
Score: 4.4
Sequence: TGTGAATAAATAGTGATT
Locus tag: swp_1378
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: swp_1379
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: swp_1380
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -95
Score: 5.3
Sequence: CATGAATTTTTATTCAAT
Locus tag: swp_4101
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -189
Score: 4.2
Sequence: CGTGATTATTAAATCACA
Locus tag: swp_0359
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: swp_0360
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: swp_0361
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Locus tag: swp_0362
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: swp_0363
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)
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