Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_0902
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 32
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -91
Score: 4.9
Sequence: GTTGAATGGATATTCAAT
Locus tag: Shal_3114
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -100
Score: 5.6
Sequence: AATGAATTTAAATGCACT
Locus tag: Shal_0432
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -267
Score: 4.5
Sequence: CCTAAATATATATTCAAA
Locus tag: Shal_4093
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -301
Score: 4.4
Sequence: TCAGCATTTAAATTCAAG
Position: -198
Score: 4.6
Sequence: TTTGAACTATTATTCAAC
Locus tag: Shal_0969
Name: aprE2
Funciton: Cold-active alkaline serine protease (EC 3.4.21.62)
aprE2
Cold-active alkaline serine protease (EC 3.4.21.62)

Position: -103
Score: 4.9
Sequence: TATGCATAACTATTCAGT
Locus tag: Shal_2217
Name: SO2306
Funciton: Cell division protein FtsK
SO2306
Cell division protein FtsK

Position: -242
Score: 4
Sequence: TATGACTATTTATGCTTA
Locus tag: Shal_3610
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shal_3609
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shal_3608
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shal_3607
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -102
Score: 4.3
Sequence: TTTGCTTAAAAATTGATT
Position: -91
Score: 3.7
Sequence: ATTGATTTAATATTAGCT
Locus tag: Shal_0816
Name: Swoo_0949
Funciton: Peptidase U32
Swoo_0949
Peptidase U32

Position: -155
Score: 4.4
Sequence: AACGCATAAAAATGCACC
Locus tag: Shal_0887
Name: SO0762
Funciton: Isochorismate hydrolase (EC 3.3.2.1)
SO0762
Isochorismate hydrolase (EC 3.3.2.1)

Position: -53
Score: 4.9
Sequence: AGTGCATAAAGATTCATT
Locus tag: Shal_4092
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Shal_4091
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Shal_4090
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Shal_4089
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -169
Score: 4.1
Sequence: ATTTCATTAATAGTCATC
Position: -137
Score: 4.6
Sequence: TGTGCATTTTGATGCAAA
Locus tag: Shal_1604
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -228
Score: 5.3
Sequence: AATGAATTATTATTCAAC
Position: -98
Score: 4.7
Sequence: CTTGAATTTTTAATCAAA
Locus tag: Shal_3484
Name: artI
Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Shal_3485
Name: artQ
Funciton: Arginine ABC transporter, permease protein
Locus tag: Shal_3486
Name: artM
Funciton: Arginine ABC transporter, ATP-binding protein
artI
Arginine ABC transporter, substrate-binding protein
artQ
Arginine ABC transporter, permease protein
artM
Arginine ABC transporter, ATP-binding protein

Position: -355
Score: 4.6
Sequence: TATGCATAAATAAGCAAA
Position: -331
Score: 3.8
Sequence: AGTGACTACCATTTCACT
Position: -310
Score: 4
Sequence: TCTGCAAGAAAAATCACT
Locus tag: Shal_1061
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Shal_1060
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -122
Score: 3.8
Sequence: ATTGAACATATATACTCT
Position: -26
Score: 4.5
Sequence: TTTGAATATATATTTAGG
Locus tag: Shal_4094
Name: argE
Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
argE
Acetylornithine deacetylase (EC 3.5.1.16)

Position: -230
Score: 3.9
Sequence: CATGATATTTAATTCATC
Locus tag: Shal_1686
Name: SO2753
Funciton: Prolyl endopeptidase (EC 3.4.21.26)
SO2753
Prolyl endopeptidase (EC 3.4.21.26)

Position: -95
Score: 5.5
Sequence: AATGAATTTTTATTCACA
Locus tag: Shal_0902
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -63
Score: 4.8
Sequence: GGTGAATATTTATTGAGT
Position: -43
Score: 4.1
Sequence: CATCCATGTTTATTCACA
Locus tag: Shal_1235
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Shal_1236
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Shal_1237
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -193
Score: 4.2
Sequence: CGTGATTATTAAATCACA
Locus tag: Shal_3944
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Shal_3943
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Shal_3942
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Locus tag: Shal_3941
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Shal_3940
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD