Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_0951
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 31
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -98
Score: 5.2
Sequence: AGTGAATTTATAATCATT
Position: -77
Score: 3.7
Sequence: CACGCATAATTATTGACT
Locus tag: Ssed_3760
Name: artI
Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Ssed_3761
Name: artQ
Funciton: Arginine ABC transporter, permease protein
Locus tag: Ssed_3762
Name: artM
Funciton: Arginine ABC transporter, ATP-binding protein
artI
Arginine ABC transporter, substrate-binding protein
artQ
Arginine ABC transporter, permease protein
artM
Arginine ABC transporter, ATP-binding protein

Position: -256
Score: 4
Sequence: GTAAAATATATATTCAAA
Position: -235
Score: 3.5
Sequence: ATTGCATAATTAGTTTGT
Locus tag: Ssed_4276
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -199
Score: 4.9
Sequence: ACTCAATAAAAATTCACA
Position: -88
Score: 5.3
Sequence: TTTGCATTAAAATGCAAT
Locus tag: Ssed_0388
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -257
Score: 3.9
Sequence: TGTGACTGACGATTCAAT
Locus tag: Ssed_1061
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Ssed_1062
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Ssed_1063
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Ssed_1064
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)

Position: -354
Score: 4
Sequence: ATTTCATTATTAGTCATC
Position: -322
Score: 4.3
Sequence: TGTGCATTTCGATGCAAA
Locus tag: Ssed_2842
Name: null
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -146
Score: 3.7
Sequence: AGTGCATTACTGAGCAAA
Position: -92
Score: 4.3
Sequence: AATGAATTTATATTAGCT
Locus tag: Ssed_0847
Name: Swoo_0949
Funciton: Peptidase U32
Swoo_0949
Peptidase U32

Position: -83
Score: 4.5
Sequence: TTTGAATGTTTGTTCAAA
Position: -59
Score: 3.9
Sequence: CTTGAATGATCGTTCAAA
Position: -32
Score: 4.4
Sequence: CTTGAATGAACATTCAAG
Locus tag: Ssed_3644
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -246
Score: 3.9
Sequence: TATGACTAATTATGCTTA
Locus tag: Ssed_0809
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Ssed_0810
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Ssed_0811
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Ssed_0812
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -61
Score: 4.6
Sequence: ACTGTATATAAAATCAGT
Locus tag: Ssed_1281
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -301
Score: 4.1
Sequence: CGTGCAAAAAAAATCACT
Position: -127
Score: 4.3
Sequence: ACTCAAATTTTATGCAAT
Position: -62
Score: 3.8
Sequence: GGTGAATATCTATACTAA
Locus tag: Ssed_1126
Name: null
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Ssed_1125
Name: null
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -187
Score: 4.2
Sequence: ACGCAATATTTATTCAGT
Locus tag: Ssed_1611
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -51
Score: 4.4
Sequence: AATGCATAAGGATTCACT
Locus tag: Ssed_4275
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Ssed_4274
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Ssed_4273
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Ssed_4272
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -48
Score: 3.5
Sequence: ACAAACTAATTATGCAAT
Position: -27
Score: 4
Sequence: TTTGAATATATATTTTAC
Locus tag: Ssed_4277
Name: argE
Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
argE
Acetylornithine deacetylase (EC 3.5.1.16)

Position: -287
Score: 3.6
Sequence: TTTGCATGGTTAGTGAAA
Locus tag: Ssed_2036
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -95
Score: 5.2
Sequence: GTTGCATTTTTATTCATA
Locus tag: Ssed_0951
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -322
Score: 4.4
Sequence: ACTGCATAACTTTTCATT
Locus tag: Ssed_1320
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Ssed_1321
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Ssed_1322
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -58
Score: 4.8
Sequence: TTTGAATGGATATTCATA
Locus tag: Ssed_3353
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family
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