Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_0671
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 42
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -233
Score: 4.1
Sequence: AGTCACTTTTTAATCAAT
Position: -147
Score: 3.6
Sequence: AAGCAATAGTTATGCAAA
Locus tag: Sama_1321
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -241
Score: 3.7
Sequence: AATAGATATTCATGCATA
Locus tag: Sama_0256
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -102
Score: 4.2
Sequence: CCTGCATGGACATGCACT
Locus tag: Sama_0994
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -86
Score: 5.7
Sequence: TGTGAATTTAAATTCACT
Locus tag: Sama_0330
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -236
Score: 4.3
Sequence: TCCGAATATTCATTCAGC
Position: -185
Score: 4.5
Sequence: TTTGCATAAATATTCTAA
Locus tag: Sama_2185
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -157
Score: 4.5
Sequence: AGTGATTATTAAATCACA
Locus tag: Sama_3281
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Sama_3280
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Sama_3279
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Sama_3278
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)

Position: -179
Score: 4.3
Sequence: ATCGCATAAAAATACAAT
Position: -52
Score: 4.2
Sequence: ATTTAATAAATATTGACA
Locus tag: Sama_3334
Name: speF
Funciton: Ornithine decarboxylase (EC 4.1.1.17)
Locus tag: Sama_3335
Name: potE
Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE
Locus tag: Sama_3336
Name: SO0312
Funciton: Predicted outer membrane porin
speF
Ornithine decarboxylase (EC 4.1.1.17)
potE
Putrescine/proton symporter, putrescine/ornithine antiporter PotE
SO0312
Predicted outer membrane porin

Position: -72
Score: 3.8
Sequence: ACTGTACAAAAAATCAGT
Position: -50
Score: 3.7
Sequence: ACTGTGTATCAATACAGT
Locus tag: Sama_1026
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -308
Score: 3.8
Sequence: TATGTCTATTTATCCAAT
Position: -247
Score: 4.2
Sequence: TCTGACTAAATATGCCAT
Locus tag: Sama_3011
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sama_3010
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sama_3009
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Sama_3008
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -44
Score: 5.4
Sequence: AATGCATAAAAATTCATT
Locus tag: Sama_0257
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Sama_0258
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Sama_0259
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Sama_0260
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -352
Score: 5
Sequence: TATGAATATTCATGCAAA
Locus tag: Sama_1941
Name: hisG
Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17)
Locus tag: Sama_1942
Name: hisD
Funciton: Histidinol dehydrogenase (EC 1.1.1.23)
Locus tag: Sama_1943
Name: hisC
Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9)
Locus tag: Sama_1944
Name: hisB
Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
Locus tag: Sama_1945
Name: hisH
Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Locus tag: Sama_1946
Name: hisA
Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
Locus tag: Sama_1947
Name: hisF
Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Locus tag: Sama_1948
Name: hisI
Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
hisG
ATP phosphoribosyltransferase (EC 2.4.2.17)
hisD
Histidinol dehydrogenase (EC 1.1.1.23)
hisC
Histidinol-phosphate aminotransferase (EC 2.6.1.9)
hisB
Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisF
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)

Position: -85
Score: 4.5
Sequence: TTTGAATGTATGTTCAAA
Position: -61
Score: 4
Sequence: CTTGAATGTATGTTCAAG
Position: -34
Score: 3.7
Sequence: TTTGAATGCCTGTTCAAA
Locus tag: Sama_2407
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -362
Score: 4.6
Sequence: TTTGAATAGTTAATCAAT
Position: -316
Score: 4
Sequence: CCTGCAAAAAAAATCACT
Locus tag: Sama_0857
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Sama_0856
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -201
Score: 5.5
Sequence: TTTGAATAAATATTCAGT
Locus tag: Sama_1838
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -98
Score: 5.3
Sequence: TCTGCATTTTTATTCACA
Locus tag: Sama_0671
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -352
Score: 4.1
Sequence: ACTGCATATACTTCCACT
Position: -307
Score: 3.6
Sequence: TCTGCCCATGAATGCAGT
Locus tag: Sama_1051
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Sama_1052
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Sama_1053
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -239
Score: 4.1
Sequence: ACTGATTTTTAAAGCAAG
Position: -177
Score: 3.6
Sequence: ACTGAGTGCATATTAAAA
Locus tag: Sama_2642
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Sama_2641
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Sama_2640
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Sama_2639
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)

Position: -50
Score: 3.7
Sequence: ACTCTTTAATTATGCAAT
Locus tag: Sama_0255
Name: argE
Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
argE
Acetylornithine deacetylase (EC 3.5.1.16)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD