Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_0640
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -301
Score: 4.4
Sequence: TATGTGTAATTATTCACT
Position: -241
Score: 3.9
Sequence: TATGACTATTTATGCTTC
Position: -189
Score: 4
Sequence: TATCAATCTTTATGCAGA
Locus tag: Sfri_3299
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sfri_3298
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sfri_3297
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Sfri_3296
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -186
Score: 5
Sequence: AGTGCATTTTTAGTCATT
Locus tag: Sfri_2479
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -59
Score: 4.9
Sequence: AGTGCATTAAAATCCATT
Locus tag: Sfri_0192
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Sfri_0193
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Sfri_0194
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Sfri_0195
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -61
Score: 4.4
Sequence: CTTGAATGTGCATTCAAT
Position: -33
Score: 4.2
Sequence: CTTGAATGCATATTCAAG
Locus tag: Sfri_1089
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -268
Score: 4.2
Sequence: AGTGCATAAATCCTCATT
Position: -114
Score: 4.1
Sequence: GGTGAACACTTATTCACA
Locus tag: Sfri_1720
Name: hisG
Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17)
Locus tag: Sfri_1719
Name: hisD
Funciton: Histidinol dehydrogenase (EC 1.1.1.23)
Locus tag: Sfri_1718
Name: hisC
Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9)
Locus tag: Sfri_1717
Name: hisB
Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
Locus tag: Sfri_1716
Name: hisH
Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Locus tag: Sfri_1715
Name: hisA
Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
Locus tag: Sfri_1714
Name: hisF
Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Locus tag: Sfri_1713
Name: hisI
Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
hisG
ATP phosphoribosyltransferase (EC 2.4.2.17)
hisD
Histidinol dehydrogenase (EC 1.1.1.23)
hisC
Histidinol-phosphate aminotransferase (EC 2.6.1.9)
hisB
Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisF
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)

Position: -112
Score: 3.6
Sequence: GATGATAAAATAGTCAAC
Position: -71
Score: 4.6
Sequence: ACTGTATATAAAATCAGT
Position: -49
Score: 3.7
Sequence: ACTGTTTATCAATACAGT
Locus tag: Sfri_1043
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -190
Score: 5.4
Sequence: GTTGAATTTTAATTCAAA
Locus tag: Sfri_2692
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -130
Score: 4.2
Sequence: AGTGAAATAAAATGCTTT
Position: -109
Score: 5.6
Sequence: AGTGAATTAAAATGCAAT
Locus tag: Sfri_3825
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -249
Score: 3.9
Sequence: ACTGAATGATTATTGCAA
Position: -228
Score: 4
Sequence: AGTGATTTTTTAACCAAT
Locus tag: Sfri_3009
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Sfri_3008
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Sfri_3007
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Sfri_3006
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)

Position: -88
Score: 4.8
Sequence: ACTGAATGGACATTCAAT
Locus tag: Sfri_1012
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -202
Score: 4.6
Sequence: AGTGATTATTAAGTCACA
Locus tag: Sfri_0422
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Sfri_0423
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Sfri_0424
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Sfri_0425
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)

Position: -358
Score: 5
Sequence: AATGAATATTTAATCATT
Position: -312
Score: 4.3
Sequence: TTTAAAATAAAATTCACT
Locus tag: Sfri_2951
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Sfri_2952
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -451
Score: 4.9
Sequence: TCTGAATAAATACTCAGT
Position: -72
Score: 4.2
Sequence: ACTGACCAATTATTCATA
Locus tag: Sfri_2416
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -182
Score: 3.8
Sequence: GTTGAATAATCGTTGAGT
Position: -165
Score: 4.6
Sequence: TTTGAATATTTATGCTTT
Locus tag: Sfri_1065
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Sfri_1066
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Sfri_1067
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -104
Score: 5.6
Sequence: AATGAATTTTTATTCAAT
Locus tag: Sfri_0640
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -114
Score: 4.4
Sequence: TCTGAGTGAACATTCATA
Locus tag: Sfri_0893
Name: SO0762
Funciton: Isochorismate hydrolase (EC 3.3.2.1)
SO0762
Isochorismate hydrolase (EC 3.3.2.1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD