Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella sp ANA-3

Properties
Regulator type: Transcription factor
TF locus tag: Shewana3_3510
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 41
- Operons 24
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -60
Score: 4.9
Sequence: AATGCATAAAGATTCACT
Locus tag: Shewana3_3904
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Shewana3_3903
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Shewana3_3902
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Shewana3_3901
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -206
Score: 4.5
Sequence: GATGAATGTTTATTGAGT
Position: -61
Score: 4.8
Sequence: ACTGAATAAATATTAAAA
Locus tag: Shewana3_1690
Name: SO1915
Funciton: Serine protease, subtilase family
SO1915
Serine protease, subtilase family

Position: -84
Score: 4.5
Sequence: TTTGAACAAACATTCAAA
Position: -60
Score: 3.9
Sequence: CTTGAATGATCGTTCAAA
Position: -33
Score: 4
Sequence: CTTGAATGCACATTCAAG
Locus tag: Shewana3_1159
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -357
Score: 3.7
Sequence: ACTGATTTTTCAGTCTTT
Position: -327
Score: 4.4
Sequence: ACTGAGTTATTAAGCAGT
Position: -249
Score: 4
Sequence: TAAAAATATATATTCACA
Locus tag: Shewana3_3905
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -106
Score: 4.2
Sequence: TTTAAATTCACATTCAGT
Locus tag: Shewana3_4118
Name: SO4732
Funciton: Conserved hypothetical protein
SO4732
Conserved hypothetical protein

Position: -99
Score: 4.9
Sequence: GTTGAATGAAAATGCACC
Locus tag: Shewana3_1062
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -227
Score: 4
Sequence: AGTCACTTTTTAATCAAA
Position: -132
Score: 3.6
Sequence: TATGCATTTATCGTGAAA
Position: -40
Score: 4.1
Sequence: TTTGAATAAATAATAACC
Locus tag: Shewana3_1728
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -190
Score: 4.7
Sequence: CATGAGTATTTATTCATT
Locus tag: Shewana3_1443
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -289
Score: 5.1
Sequence: TTTGAATTTGTATTCAAT
Locus tag: Shewana3_0264
Name: mcp(Arg)
Funciton: Methyl-accepting chemotaxis protein
mcp(Arg)
Methyl-accepting chemotaxis protein

Position: -141
Score: 4.3
Sequence: TTTGAAAATATAAGCACT
Position: -79
Score: 5.4
Sequence: GGTGAATTAAAATGCAAT
Locus tag: Shewana3_3767
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -268
Score: 5.2
Sequence: TATGCATATTAATTCAGA
Locus tag: Shewana3_1795
Name: SO1443
Funciton: Conserved hypothetical protein
SO1443
Conserved hypothetical protein

Position: -376
Score: 3.9
Sequence: TTTGAAATCCCATTCAAT
Position: -164
Score: 4.2
Sequence: ACTGCTTGTTAATGCAAG
Locus tag: Shewana3_3097
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Shewana3_3096
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Shewana3_3095
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Shewana3_3094
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)

Position: -25
Score: 4.7
Sequence: AATGAAAATAAATTCAGG
Locus tag: Shewana3_2487
Name: ggt2
Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
ggt2
Gamma-glutamyltranspeptidase (EC 2.3.2.2)

Position: -742
Score: 5.3
Sequence: TCTGCATTTTTATTCAAA
Locus tag: Shewana3_3871
Name: speF
Funciton: Ornithine decarboxylase (EC 4.1.1.17)
Locus tag: Shewana3_3872
Name: potE
Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE
Locus tag: Shewana3_3873
Name: SO0312
Funciton: Predicted outer membrane porin
speF
Ornithine decarboxylase (EC 4.1.1.17)
potE
Putrescine/proton symporter, putrescine/ornithine antiporter PotE
SO0312
Predicted outer membrane porin

Position: -209
Score: 4.2
Sequence: ATTGAATTTTTATTGGTA
Position: -165
Score: 5.3
Sequence: AGTGAATGAAAATTCAGA
Locus tag: Shewana3_3292
Name: pbpG
Funciton: D-alanyl-D-alanine endopeptidase
pbpG
D-alanyl-D-alanine endopeptidase

Position: -201
Score: 4.5
Sequence: AGTGATTATTAAATCACA
Locus tag: Shewana3_0356
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Shewana3_0357
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Shewana3_0358
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Shewana3_0359
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)

Position: -307
Score: 4.1
Sequence: ATTGTGTAGTTATTCATA
Position: -247
Score: 4
Sequence: TCTGACTAAATATGCTAA
Locus tag: Shewana3_0610
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shewana3_0611
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shewana3_0612
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shewana3_0613
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -468
Score: 3.9
Sequence: AATCACAATTTATTCATT
Position: -384
Score: 3.8
Sequence: TATGCATATTTCTCCATA
Position: -106
Score: 3.6
Sequence: ACTGAATGAAAGTGAATC
Locus tag: Shewana3_1958
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -360
Score: 4.5
Sequence: ATAGAATAACAATTCATT
Position: -339
Score: 4
Sequence: TATAAATTTTTATACATC
Position: -314
Score: 4.3
Sequence: TTTGCAATAAAAATCACT
Locus tag: Shewana3_3050
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Shewana3_3051
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -71
Score: 5.1
Sequence: ACTGTATATAAATTCAGT
Position: -49
Score: 3.7
Sequence: ACTGTTTATCAATACAGT
Locus tag: Shewana3_1104
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -93
Score: 5.5
Sequence: ATTGCATTTTTATTCAGT
Locus tag: Shewana3_3510
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -444
Score: 4.1
Sequence: AATGCATTTGCAATCAAC
Position: -172
Score: 5
Sequence: AATGCATAAAAATACACT
Locus tag: Shewana3_2536
Name: SO2753
Funciton: Prolyl endopeptidase (EC 3.4.21.26)
SO2753
Prolyl endopeptidase (EC 3.4.21.26)

Position: -254
Score: 4.4
Sequence: AATGAATAAAAAATGATA
Position: -97
Score: 4.8
Sequence: TATGCATTTTTAATCATT
Position: -76
Score: 4
Sequence: AAAGCATAATTATTGAAA
Locus tag: Shewana3_0882
Name: artI
Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Shewana3_0881
Name: artQ
Funciton: Arginine ABC transporter, permease protein
Locus tag: Shewana3_0880
Name: artM
Funciton: Arginine ABC transporter, ATP-binding protein
artI
Arginine ABC transporter, substrate-binding protein
artQ
Arginine ABC transporter, permease protein
artM
Arginine ABC transporter, ATP-binding protein

Position: -234
Score: 3.9
Sequence: ATTGATTTTAAATAAATA
Position: -195
Score: 4.1
Sequence: ACCGATTAAAAATGCACC
Locus tag: Shewana3_3533
Name: SO0762
Funciton: Isochorismate hydrolase (EC 3.3.2.1)
SO0762
Isochorismate hydrolase (EC 3.3.2.1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD