Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella baltica OS155

Properties
Regulator type: Transcription factor
TF locus tag: Sbal_0608
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 37
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -99
Score: 5
Sequence: AATGAATTTTTAATCAAA
Position: -78
Score: 4
Sequence: ACAGCATAATTATTGACA
Locus tag: Sbal_3392
Name: artI
Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Sbal_3393
Name: artQ
Funciton: Arginine ABC transporter, permease protein
Locus tag: Sbal_3394
Name: artM
Funciton: Arginine ABC transporter, ATP-binding protein
artI
Arginine ABC transporter, substrate-binding protein
artQ
Arginine ABC transporter, permease protein
artM
Arginine ABC transporter, ATP-binding protein

Position: -84
Score: 4.9
Sequence: TTTGAATGAACATTCAAA
Position: -33
Score: 4.2
Sequence: CTTGAATGCATATTCAAG
Locus tag: Sbal_1249
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -471
Score: 4.2
Sequence: ATTCAATATAAATGCGAA
Position: -252
Score: 4
Sequence: TAAAAATATATATTCACA
Position: -130
Score: 3.8
Sequence: AGTGAATAAAATAACAAC
Locus tag: Sbal_4124
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -118
Score: 3.8
Sequence: AATGAGAATAAATTCTTT
Position: -97
Score: 5.5
Sequence: TGTGAATTAAAATGCAAT
Locus tag: Sbal_0380
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -121
Score: 4.9
Sequence: ATTGAATGGTTATTCATA
Locus tag: Sbal_2816
Name: SO1915
Funciton: Serine protease, subtilase family
SO1915
Serine protease, subtilase family

Position: -189
Score: 5.4
Sequence: GTTGAATTTATATTCACA
Locus tag: Sbal_2779
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -112
Score: 4.8
Sequence: AACGCATTTAAATTCACA
Locus tag: Sbal_0045
Name: SO4732
Funciton: Conserved hypothetical protein
SO4732
Conserved hypothetical protein

Position: -332
Score: 5.2
Sequence: GATGAATTTATATGCATA
Position: -311
Score: 4.5
Sequence: AATAAATTTCAATGCATT
Locus tag: Sbal_0274
Name: mcp(Arg)
Funciton: Methyl-accepting chemotaxis protein
mcp(Arg)
Methyl-accepting chemotaxis protein

Position: -749
Score: 4.2
Sequence: TATGCATAACCATGCAGG
Locus tag: Sbal_4084
Name: speF
Funciton: Ornithine decarboxylase (EC 4.1.1.17)
Locus tag: Sbal_4085
Name: potE
Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE
Locus tag: Sbal_4086
Name: SO0312
Funciton: Predicted outer membrane porin
speF
Ornithine decarboxylase (EC 4.1.1.17)
potE
Putrescine/proton symporter, putrescine/ornithine antiporter PotE
SO0312
Predicted outer membrane porin

Position: -225
Score: 4.7
Sequence: TTTGAGTGTTAATGCAAT
Locus tag: Sbal_1108
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Sbal_1109
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Sbal_1110
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Sbal_1111
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)

Position: -137
Score: 3.6
Sequence: CATGCATAATCAGTTAAT
Position: -71
Score: 4.6
Sequence: ACTGTATATAAAATCAGT
Position: -49
Score: 3.7
Sequence: ACTGTTTATCAATACAGT
Locus tag: Sbal_3153
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -25
Score: 4.7
Sequence: AATGAAAATAAATTCAGG
Locus tag: Sbal_2620
Name: ggt2
Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
ggt2
Gamma-glutamyltranspeptidase (EC 2.3.2.2)

Position: -247
Score: 3.9
Sequence: TATGACTAATTATGCTGA
Locus tag: Sbal_0571
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sbal_0572
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sbal_0573
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Sbal_0574
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -226
Score: 4
Sequence: AGTCACTTTTTAATCAAA
Position: -132
Score: 3.6
Sequence: TATGCATTTATCGTGAAA
Position: -40
Score: 3.6
Sequence: TATGAACAAATAATAACT
Locus tag: Sbal_2497
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -60
Score: 4.9
Sequence: AATGCATAAAGATTCATT
Locus tag: Sbal_4123
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Sbal_4122
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Sbal_4121
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Sbal_4120
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -99
Score: 5.2
Sequence: GTTGAATTTAAATGCACC
Locus tag: Sbal_3205
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -361
Score: 5.3
Sequence: AATGAATAATAATTCAAC
Position: -315
Score: 4.3
Sequence: TTTGCAATAAAAATCACT
Locus tag: Sbal_1178
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Sbal_1177
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -444
Score: 4.1
Sequence: AATGCATTTGCAATCAAC
Position: -192
Score: 3.9
Sequence: AATAACTTATAAATCACT
Position: -171
Score: 4.9
Sequence: AGTGCATAATAATACACT
Locus tag: Sbal_1741
Name: SO2753
Funciton: Prolyl endopeptidase (EC 3.4.21.26)
SO2753
Prolyl endopeptidase (EC 3.4.21.26)

Position: -487
Score: 3.8
Sequence: TTTGCATAAATATTACAA
Position: -390
Score: 3.5
Sequence: TGTCTATAGCTATGCATT
Locus tag: Sbal_2044
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -96
Score: 5.5
Sequence: AGTGAATTTTTATTCAAC
Locus tag: Sbal_0608
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -139
Score: 4.9
Sequence: TGTGATTTTTTATTCAAA
Locus tag: Sbal_1024
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Sbal_1025
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Sbal_1026
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD