Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of ArgR in Shewanella putrefaciens CN-32

Properties
Regulator type: Transcription factor
TF locus tag: Sputcn32_3220
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 40
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -307
Score: 4.1
Sequence: ATTGTGTAGTTATTCATA
Position: -247
Score: 4
Sequence: TCTGACTAAATATGCTAC
Locus tag: Sputcn32_0645
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sputcn32_0646
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sputcn32_0647
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Sputcn32_0648
Name: SO0620
Funciton: Conserved hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
Conserved hypothetical protein

Position: -225
Score: 4
Sequence: AGTCACTTTTTAATCAAA
Position: -131
Score: 4.2
Sequence: TATGCATTTATCGTCAAA
Locus tag: Sputcn32_2251
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
astB
Succinylarginine dihydrolase (EC 3.5.3.23)

Position: -156
Score: 5.6
Sequence: ATTGAATTTTTATTCACA
Locus tag: Sputcn32_2477
Name: aprE
Funciton: Alkaline serine protease
aprE
Alkaline serine protease

Position: -117
Score: 3.9
Sequence: AGTGAGAATAAATTCTTT
Position: -96
Score: 5.5
Sequence: TGTGAATTAAAATGCAAT
Locus tag: Sputcn32_0465
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
argA
N-acetylglutamate synthase (EC 2.3.1.1)

Position: -60
Score: 4.9
Sequence: AATGCATAAAGATTCATT
Locus tag: Sputcn32_3716
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Sputcn32_3715
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Sputcn32_3714
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Sputcn32_3713
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
argG
Argininosuccinate synthase (EC 6.3.4.5)
argH
Argininosuccinate lyase (EC 4.3.2.1)

Position: -71
Score: 4.6
Sequence: ACTGTATATAAAATCAGT
Position: -49
Score: 3.7
Sequence: ACTGTTTATCAATACAGT
Locus tag: Sputcn32_2771
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -332
Score: 5.3
Sequence: GATGAATTTATATGCATT
Locus tag: Sputcn32_0380
Name: mcp(Arg)
Funciton: Methyl-accepting chemotaxis protein
mcp(Arg)
Methyl-accepting chemotaxis protein

Position: -84
Score: 4.5
Sequence: TTTGAACAAACATTCAAA
Position: -60
Score: 4.7
Sequence: CTTGAATGTTCATTCAAA
Position: -33
Score: 4
Sequence: CTTGAATGCACATTCAAG
Locus tag: Sputcn32_2720
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
SO3392
NADH-dependent flavin oxidoreductase, Oye family

Position: -230
Score: 4.6
Sequence: TATGATTGATAATGCAAT
Locus tag: Sputcn32_1094
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Sputcn32_1095
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Sputcn32_1096
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Sputcn32_1097
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)

Position: -25
Score: 4.7
Sequence: AATGAAAATAAATTCAGG
Locus tag: Sputcn32_1667
Name: ggt2
Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
ggt2
Gamma-glutamyltranspeptidase (EC 2.3.2.2)

Position: -754
Score: 4.9
Sequence: TATGCATAACAATTCAAA
Locus tag: Sputcn32_3679
Name: speF
Funciton: Ornithine decarboxylase (EC 4.1.1.17)
Locus tag: Sputcn32_3680
Name: potE
Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE
Locus tag: Sputcn32_3681
Name: SO0312
Funciton: Predicted outer membrane porin
speF
Ornithine decarboxylase (EC 4.1.1.17)
potE
Putrescine/proton symporter, putrescine/ornithine antiporter PotE
SO0312
Predicted outer membrane porin

Position: -112
Score: 5.3
Sequence: GATGCATTTAAATTCACA
Locus tag: Sputcn32_3915
Name: SO4732
Funciton: Conserved hypothetical protein
SO4732
Conserved hypothetical protein

Position: -214
Score: 4.2
Sequence: CGTGATTATTAAATCACA
Locus tag: Sputcn32_3614
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Sputcn32_3613
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Sputcn32_3612
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Sputcn32_3611
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)

Position: -192
Score: 4.2
Sequence: TATGAAAATAAATTAAAA
Position: -57
Score: 3.8
Sequence: AGTGAATAAAATAACAAC
Locus tag: Sputcn32_3717
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Position: -358
Score: 4.7
Sequence: GAAGAATAAAAATTCACT
Position: -312
Score: 4.3
Sequence: TTTGCAATAAAAATCACT
Locus tag: Sputcn32_1136
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Sputcn32_1135
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -124
Score: 4.9
Sequence: GTTGAATGAAAATGCACC
Locus tag: Sputcn32_2808
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
argW
Predicted arginine uptake transporter, COG3314 family

Position: -478
Score: 4
Sequence: TGTGCATAAAAATTACAT
Locus tag: Sputcn32_1940
Name: omp(Arg)
Funciton: TonB-dependent receptor
omp(Arg)
TonB-dependent receptor

Position: -265
Score: 4.3
Sequence: TATCCTTATAAATTCACT
Position: -154
Score: 4.3
Sequence: TGTGAATATTTAGTCTTT
Position: -133
Score: 4
Sequence: TGTGATTTTATATGCTGC
Locus tag: Sputcn32_1029
Name: oadG
Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Sputcn32_1030
Name: oadA
Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Sputcn32_1031
Name: oadB
Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
oadG
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
oadB
Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)

Position: -96
Score: 5.5
Sequence: AGTGAATTTTTATTCAAC
Locus tag: Sputcn32_3220
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
argR
Arginine metabolism transcriptional regulator ArgR

Position: -444
Score: 4.1
Sequence: AATGCATTTGCAATCAAC
Position: -193
Score: 3.6
Sequence: AATAACTTATCAATCAGT
Position: -172
Score: 5
Sequence: AGTGCATAAAAATACATT
Locus tag: Sputcn32_1602
Name: SO2753
Funciton: Prolyl endopeptidase (EC 3.4.21.26)
SO2753
Prolyl endopeptidase (EC 3.4.21.26)

Position: -106
Score: 5.1
Sequence: AATGAATTTATAGTCACA
Position: -85
Score: 4
Sequence: AAAGCATAATTATTGACA
Locus tag: Sputcn32_3027
Name: artI
Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Sputcn32_3028
Name: artQ
Funciton: Arginine ABC transporter, permease protein
Locus tag: Sputcn32_3029
Name: artM
Funciton: Arginine ABC transporter, ATP-binding protein
artI
Arginine ABC transporter, substrate-binding protein
artQ
Arginine ABC transporter, permease protein
artM
Arginine ABC transporter, ATP-binding protein
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