Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of AraR in Shewanella sp MR-4

Properties
Regulator type: Transcription factor
TF locus tag: Shewmr4_1981
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Regulog: AraR - Shewanellaceae
Statistics of regulated genes:
- Genes 18
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 30 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -521
Score: 5.8
Sequence: AAGTAATACAATACTACTG
Locus tag: Shewmr4_1998
Name: omp(Ara)
Funciton: Arabinose-regulated TonB-dependent outer membrane receptor
omp(Ara)
Arabinose-regulated TonB-dependent outer membrane receptor

Position: -85
Score: 5.8
Sequence: CAGTAGTATTGTATTACTT
Locus tag: Shewmr4_1999
Name: abnA
Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Locus tag: Shewmr4_2000
Name: Shewana3_2087
Funciton: membrane protein, putative
Locus tag: Shewmr4_2001
Name: araL
Funciton: L-arabinolactonase (EC 3.1.1.15)
abnA
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Shewana3_2087
membrane protein, putative
araL
L-arabinolactonase (EC 3.1.1.15)

Position: -45
Score: 6
Sequence: TGGTATTACTATAATACCA
Locus tag: Shewmr4_1982
Name: arb43
Funciton: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
arb43
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase

Position: -150
Score: 6
Sequence: TGGTATTATAGTAATACCA
Locus tag: Shewmr4_1983
Name: araC
Funciton: L-arabonate dehydratase (EC 4.2.1.25)
Locus tag: Shewmr4_1984
Name: araY
Funciton: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
Locus tag: Shewmr4_1985
Name: araM
Funciton: L-arabinose-specific 1-epimerase (mutarotase)
Locus tag: Shewmr4_1986
Name: araU
Funciton: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
Locus tag: Shewmr4_1987
Name: araV
Funciton: Predicted L-arabinose ABC transport system, ATP-binding protein
Locus tag: Shewmr4_1988
Name: araW
Funciton: Predicted L-arabinose ABC transport system, permease protein 1
Locus tag: Shewmr4_1989
Name: araZ
Funciton: Predicted L-arabinose ABC transport system, permease protein 2
Locus tag: Shewmr4_1990
Name: abfA1
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic
Locus tag: Shewmr4_1991
Name: abfA2
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic
araC
L-arabonate dehydratase (EC 4.2.1.25)
araY
predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
araM
L-arabinose-specific 1-epimerase (mutarotase)
araU
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
araV
Predicted L-arabinose ABC transport system, ATP-binding protein
araW
Predicted L-arabinose ABC transport system, permease protein 1
araZ
Predicted L-arabinose ABC transport system, permease protein 2
abfA1
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic
abfA2
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic

Position: -108
Score: 4.8
Sequence: AAATCATATTGTATTACTA
Position: -81
Score: 6.1
Sequence: TAGTAATATTGTAGTACTA
Locus tag: Shewmr4_1977
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: Shewmr4_1978
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: Shewmr4_1979
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: Shewmr4_1980
Name: araX
Funciton: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
araB
Ribulokinase (EC 2.7.1.16)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araA
L-arabinose isomerase (EC 5.3.1.4)
araX
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD