Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of AraC in Citrobacter koseri ATCC BAA-895

Properties
Regulator type: Transcription factor
TF locus tag: CKO_03318
Regulator family: AraC
Regulation mode: activator (repressor)
Biological process: Arabinose utilization
Effector: Arabinose
Regulog: AraC - Enterobacterales
Statistics of regulated genes:
- Genes 11
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 56 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -278
Score: 8.1
Sequence: TCAGGCAGGATCCGCTA-(4)-TATGGATTAAAATGCTA
Position: -204
Score: 8.3
Sequence: TGTGGACATTTCTGTCG-(4)-TATAGACACTTTTGTTA
Locus tag: CKO_03318
Name: araC
Funciton: Arabinose operon regulatory protein, AraC family
araC
Arabinose operon regulatory protein, AraC family

Position: -284
Score: 8.3
Sequence: CAAGGATTTGCTGGCTG-(4)-TATGGACTAATCTGCTA
Position: -231
Score: 6.3
Sequence: TCTGACAAAACCTTCTT-(4)-TATGTCATTTTCCGCTG
Position: -210
Score: 7.1
Sequence: TATGTCATTTTCCGCTG-(4)-TATGTACGCAATTACTG
Locus tag: CKO_01050
Name: araF
Funciton: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Locus tag: CKO_01051
Name: araG
Funciton: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)
Locus tag: CKO_01052
Name: araH
Funciton: L-arabinose transport system permease protein (TC 3.A.1.2.2)
araF
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
araG
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)
araH
L-arabinose transport system permease protein (TC 3.A.1.2.2)

Position: -189
Score: 7.5
Sequence: TGACAGGAAAATCCATA-(4)-CAGCTGCTTTTTTCATA
Locus tag: CKO_03603
Name: ytfQ
Funciton: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor
Locus tag: CKO_03602
Name: ytfR
Funciton: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
Locus tag: CKO_03601
Name: ytfT
Funciton: Galactose/arabinose ABC transport system, permease protein YtfT
Locus tag: CKO_03600
Name: yjfF
Funciton: Galactose/arabinose ABC transport system, permease protein YjfF
ytfQ
Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor
ytfR
Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
ytfT
Galactose/arabinose ABC transport system, permease protein YtfT
yjfF
Galactose/arabinose ABC transport system, permease protein YjfF

Position: -174
Score: 8.3
Sequence: TAACAAAAGTGTCTATA-(4)-CGACAGAAATGTCCACA
Position: -100
Score: 8.1
Sequence: TAGCATTTTAATCCATA-(4)-TAGCGGATCCTGCCTGA
Locus tag: CKO_03319
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: CKO_03320
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: CKO_03321
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araB
Ribulokinase (EC 2.7.1.16)
araA
L-arabinose isomerase (EC 5.3.1.4)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD