Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TPP in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Comamonadaceae
Under regulation:
- Genes 12
- Operons 4
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -187
Score: 54.3
Sequence: CATTTCGCTAGGGGT...
Locus tag: Rfer_2463
Name: cytX
Funciton: Predicted hydroxymethylpyrimidine transporter CytX
Locus tag: Rfer_2464
Name: thiO
Funciton: Glycine oxidase ThiO (EC 1.4.3.19)
Locus tag: Rfer_2465
Name: thiS
Funciton: Sulfur carrier protein ThiS
Locus tag: Rfer_2466
Name: thiG
Funciton: Thiazole biosynthesis protein ThiG
Locus tag: Rfer_2467
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
cytX
Predicted hydroxymethylpyrimidine transporter CytX
thiO
Glycine oxidase ThiO (EC 1.4.3.19)
thiS
Sulfur carrier protein ThiS
thiG
Thiazole biosynthesis protein ThiG
thiE
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Position: -197
Score: 60.8
Sequence: CGCCCTGCCCGGGGT...
Locus tag: Rfer_1708
Name: thiC
Funciton: Thiamin biosynthesis protein ThiC
thiC
Thiamin biosynthesis protein ThiC

Position: -140
Score: 54.9
Sequence: GCGAGTTCACCGGGG...
Locus tag: Rfer_3246
Name: thiB
Funciton: Thiamin ABC transporter, substrate-binding component
Locus tag: Rfer_3245
Name: thiP
Funciton: Thiamin ABC transporter, permease protein
Locus tag: Rfer_3244
Name: thiQ
Funciton: Thiamin ABC transporter, ATP-binding protein
thiB
Thiamin ABC transporter, substrate-binding component
thiP
Thiamin ABC transporter, permease protein
thiQ
Thiamin ABC transporter, ATP-binding protein

Position: -137
Score: 60.4
Sequence: CCGTGCTTGCTAGAG...
Locus tag: Rfer_2472
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: Rfer_2471
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: Rfer_2470
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiM
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD