Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CodY in Streptococcus uberis 0140J

Properties
Regulator type: Transcription factor
TF locus tag: SUB1528
Regulator family: CodY
Regulation mode: repressor (activator)
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Regulog: CodY - Streptococcaceae
Statistics of regulated genes:
- Genes 31
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 273 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -66
Score: 5.6
Sequence: AATTTTCTGATAATT
Locus tag: SUB0432
Name: livK
Funciton: Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
Locus tag: SUB0433
Name: livH
Funciton: Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1)
Locus tag: SUB0434
Name: livM
Funciton: Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1)
Locus tag: SUB0435
Name: livG
Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1)
Locus tag: SUB0436
Name: livF
Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)
livK
Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
livH
Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1)
livM
Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1)
livG
Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1)
livF
Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)

Position: -88
Score: 4.8
Sequence: AATATTCCGAATATT
Locus tag: SUB1010
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)

Position: -53
Score: 5.3
Sequence: AAAATTCTGAAAATT
Locus tag: SUB0445
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: SUB0446
Name: yesJ
Funciton: Acetyltransferase (EC 2.3.1.-), GNAT family
Locus tag: SUB0447
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
yesJ
Acetyltransferase (EC 2.3.1.-), GNAT family
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)

Position: -87
Score: 5.4
Sequence: AATTTTCAGACAATT
Locus tag: SUB1220
Name: gapN
Funciton: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)
gapN
Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)

Position: -88
Score: 5.2
Sequence: AATTTTCAGATAAAT
Locus tag: SUB1625
Name: oppA1
Funciton: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
Locus tag: SUB1624
Name: oppB1
Funciton: Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1)
Locus tag: SUB1623
Name: oppC1
Funciton: Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1)
Locus tag: SUB1622
Name: oppD1
Funciton: Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1)
Locus tag: SUB1621
Name: oppF1
Funciton: Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)
oppA1
Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
oppB1
Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1)
oppC1
Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1)
oppD1
Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1)
oppF1
Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)

Position: -60
Score: 5.6
Sequence: AATATTCTGAAAATT
Locus tag: SUB0762
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)

Position: -82
Score: 5.6
Sequence: AATTTTCTGATAATT
Locus tag: SUB1528
Name: codY
Funciton: Nutrient limitation global transcriptional regulator CodY, CodY family
Locus tag: SUB1527
Name: pncA
Funciton: Nicotinamidase (EC 3.5.1.19)
codY
Nutrient limitation global transcriptional regulator CodY, CodY family
pncA
Nicotinamidase (EC 3.5.1.19)

Position: -43
Score: 5.1
Sequence: AATTGTTAGAAAATT
Locus tag: SUB0370
Name: braB
Funciton: Branched-chain amino acid transport system carrier protein
braB
Branched-chain amino acid transport system carrier protein

Position: -103
Score: 5.1
Sequence: AATATTCAGAAAATA
Locus tag: SUB1627
Name: glnR
Funciton: Nitrogen metabolism transcriptional regulator GlnR, MerR family
Locus tag: SUB1626
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnR
Nitrogen metabolism transcriptional regulator GlnR, MerR family
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -154
Score: 4.8
Sequence: CTTTTTCTGAAAATT
Locus tag: SUB0601
Name: pepF
Funciton: Oligoendopeptidase F
pepF
Oligoendopeptidase F

Position: -55
Score: 4.8
Sequence: AATTTTCAGAAAAAG
Locus tag: SUB0602
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)

Position: -92
Score: 5
Sequence: AATTATCAGATATTT
Locus tag: SUB0889
Name: dtpT
Funciton: Di- and tripeptide permease DtpT
dtpT
Di- and tripeptide permease DtpT

Position: -26
Score: 5
Sequence: AATATTCATAAAATT
Locus tag: SUB0316
Name: thrA
Funciton: Aspartokinase (EC 2.7.2.4)
thrA
Aspartokinase (EC 2.7.2.4)

Position: -90
Score: 4.6
Sequence: AAGATTCTAAAAATT
Locus tag: SUB0115
Name: rpoB
Funciton: DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
Locus tag: SUB0116
Name: rpoC
Funciton: DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)
rpoB
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
rpoC
DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)

Position: -54
Score: 4.8
Sequence: AATATTCTGAAAAAA
Locus tag: SUB1411
Name: aapA
Funciton: Amino acid permease
aapA
Amino acid permease

Position: -123
Score: 4.6
Sequence: AATATACTGAAAAAT
Locus tag: SUB1323
Name: asnA
Funciton: Aspartate--ammonia ligase (EC 6.3.1.1)
asnA
Aspartate--ammonia ligase (EC 6.3.1.1)

Position: -54
Score: 5.5
Sequence: AATTTTTAGAAAATT
Locus tag: SUB0939
Name: asd
Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Locus tag: SUB0938
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
asd
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
dapA
Dihydrodipicolinate synthase (EC 4.2.1.52)
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