Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_0929
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 29
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -218
Score: 4.4
Sequence: TACCAAGTTAGAGGTA
Position: -192
Score: 4.1
Sequence: TATCTCCTTACGAGTA
Locus tag: Ssed_1912
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Ssed_1913
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Ssed_1914
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Ssed_1915
Name: napC2
Funciton: Cytochrome c-type protein NapC
napD2
Periplasmic nitrate reductase component NapD
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB2
Nitrate reductase cytochrome c550-type subunit
napC2
Cytochrome c-type protein NapC

Position: -100
Score: 5
Sequence: TACCCCCTTAGGGGTA
Locus tag: Ssed_0931
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -133
Score: 4
Sequence: TATCTATAACTGGGTA
Locus tag: Ssed_1469
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -109
Score: 4.7
Sequence: TATCCCTTTATGGGTA
Locus tag: Ssed_0742
Name: Spea_3600
Funciton: Predicted deca-heme c-type cytochrome
Spea_3600
Predicted deca-heme c-type cytochrome

Position: -235
Score: 4.1
Sequence: TAGTTCTTTAGTAGTA
Locus tag: Ssed_1953
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: Ssed_1954
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Ssed_1955
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Ssed_1956
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Ssed_1957
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
narK
Nitrate/nitrite antiporter
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)

Position: -132
Score: 4.7
Sequence: TACCTCTTGTTGGGTA
Locus tag: Ssed_3956
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Ssed_3957
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Ssed_3958
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Ssed_3959
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Ssed_3960
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit

Position: -176
Score: 4.6
Sequence: TACTACTTTAGGAGTA
Position: -162
Score: 5
Sequence: TACCTCCTTATAAGTA
Locus tag: Ssed_3185
Name: Shew_2655
Funciton: Conserved hypothetical protein
Shew_2655
Conserved hypothetical protein

Position: -173
Score: 5.2
Sequence: TACCTCTTTAGGGATA
Locus tag: Ssed_3744
Name: swp_0614
Funciton: Cytochrome c552 precursor (EC 1.7.2.2)
swp_0614
Cytochrome c552 precursor (EC 1.7.2.2)

Position: -230
Score: 4.1
Sequence: TAACGCTTTTTAAGTA
Locus tag: Ssed_0346
Name: SO3059
Funciton: Predicted transcriptional activator
SO3059
Predicted transcriptional activator

Position: -263
Score: 4.1
Sequence: TACTTCGTTCTAGGTA
Locus tag: Ssed_4009
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted

Position: -159
Score: 4.7
Sequence: TACCTCTAAAGTTGTA
Locus tag: Ssed_0273
Name: Sfri_3897
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Ssed_0274
Name: Sfri_3896
Funciton: Flavocytochrome c, heme submit
Sfri_3897
Flavocytochrome c, flavin subunit
Sfri_3896
Flavocytochrome c, heme submit

Position: -209
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Ssed_1526
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -161
Score: 4.9
Sequence: TACCCCTAAGGGGGTA
Locus tag: Ssed_0930
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Ssed_0929
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -205
Score: 5
Sequence: TACCCCTTTATAAATA
Locus tag: Ssed_1525
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Ssed_1524
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Ssed_1523
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB
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