Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_3961
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 32
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -226
Score: 4.7
Sequence: TACTCCTAAAGTAGTA
Locus tag: swp_0220
Name: Sfri_3897
Funciton: Flavocytochrome c, flavin subunit
Locus tag: swp_0221
Name: Sfri_3896
Funciton: Flavocytochrome c, heme submit
Sfri_3897
Flavocytochrome c, flavin subunit
Sfri_3896
Flavocytochrome c, heme submit

Position: -136
Score: 4.6
Sequence: TATCTCTAAATGGGTA
Locus tag: swp_3395
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -110
Score: 4.6
Sequence: TATCTCTTTAGTAGTA
Locus tag: swp_0694
Name: Spea_3600
Funciton: Predicted deca-heme c-type cytochrome
Spea_3600
Predicted deca-heme c-type cytochrome

Position: -158
Score: 4.5
Sequence: TACCTACAAAGGAATA
Locus tag: swp_3404
Name: nnrS2
Funciton: NnrS protein involved in response to NO
Locus tag: swp_3403
Name: nrfA2
Funciton: Nitrite reductase, cytochrome c(552)
nnrS2
NnrS protein involved in response to NO
nrfA2
Nitrite reductase, cytochrome c(552)

Position: -111
Score: 4.9
Sequence: TACCCCTTGTGAGGTA
Locus tag: swp_4456
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: swp_4457
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: swp_4458
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit

Position: -165
Score: 5
Sequence: TACCCATTTATAGGTA
Position: -151
Score: 4.9
Sequence: TACCTCTAAATTAGTA
Locus tag: swp_1107
Name: Shew_2655
Funciton: Conserved hypothetical protein
Shew_2655
Conserved hypothetical protein

Position: -96
Score: 5
Sequence: TACCCCATAAGGGGTA
Locus tag: swp_3958
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -184
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: swp_3277
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -34
Score: 4.3
Sequence: TACCCCCTTCGATATA
Locus tag: swp_3461
Name: dmsE
Funciton: Periplasmic decaheme cytochrome c, DsmE
Locus tag: swp_3460
Name: dmsF
Funciton: Outer membrane protein, DmsF
Locus tag: swp_3459
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: swp_3458
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: swp_3457
Name: dmsG
Funciton: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG
dmsE
Periplasmic decaheme cytochrome c, DsmE
dmsF
Outer membrane protein, DmsF
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
dmsG
Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG

Position: -236
Score: 3.9
Sequence: TACCACAATAGACATA
Locus tag: swp_1238
Name: psrA
Funciton: Polysulfide reductase, subunit A
Locus tag: swp_1239
Name: psrB
Funciton: Polysulfide reductase, subunit B
Locus tag: swp_1240
Name: psrC
Funciton: Polysulfide reductase, subunit C
psrA
Polysulfide reductase, subunit A
psrB
Polysulfide reductase, subunit B
psrC
Polysulfide reductase, subunit C

Position: -18
Score: 4.8
Sequence: TACCTATAAAGGGATA
Locus tag: swp_0896
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
mtrF
Decaheme cytochrome c MtrF

Position: -193
Score: 5.1
Sequence: TACCTCTTTATAAATA
Locus tag: swp_3278
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: swp_3279
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: swp_3280
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB

Position: -197
Score: 4.3
Sequence: TACCTCTTTGTGAGTG
Locus tag: swp_2922
Name: nasA
Funciton: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4)
Locus tag: swp_2921
Name: cysG2
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: swp_2920
Name: Sfri_1507
Funciton: Glycosyl transferase, family 3
Locus tag: swp_2919
Name: Sfri_1508
Funciton: Response regulator receiver/ANTAR domain-containing protein
nasA
Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4)
cysG2
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Sfri_1507
Glycosyl transferase, family 3
Sfri_1508
Response regulator receiver/ANTAR domain-containing protein

Position: -293
Score: 5.2
Sequence: TACCTCTTAATGGGTA
Locus tag: swp_0614
Name: swp_0614
Funciton: Cytochrome c552 precursor (EC 1.7.2.2)
swp_0614
Cytochrome c552 precursor (EC 1.7.2.2)

Position: -263
Score: 5.1
Sequence: TACCCCTTATGGGGTA
Locus tag: swp_3960
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: swp_3961
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -260
Score: 5.1
Sequence: TACCCCTTTAGGGATA
Locus tag: swp_4514
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted
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