Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_0884
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 33
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -109
Score: 4.7
Sequence: TATCTCTTTAGTGGTA
Locus tag: Shal_3689
Name: Spea_3600
Funciton: Predicted deca-heme c-type cytochrome
Spea_3600
Predicted deca-heme c-type cytochrome

Position: -153
Score: 4.6
Sequence: TACCTATAAAGATATA
Locus tag: Shal_1261
Name: nnrS2
Funciton: NnrS protein involved in response to NO
Locus tag: Shal_1262
Name: nrfA2
Funciton: Nitrite reductase, cytochrome c(552)
nnrS2
NnrS protein involved in response to NO
nrfA2
Nitrite reductase, cytochrome c(552)

Position: -157
Score: 4.1
Sequence: CACTTCTAAAGTAGTA
Locus tag: Shal_0331
Name: Sfri_3897
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shal_0332
Name: Sfri_3896
Funciton: Flavocytochrome c, heme submit
Sfri_3897
Flavocytochrome c, flavin subunit
Sfri_3896
Flavocytochrome c, heme submit

Position: -101
Score: 4.3
Sequence: TACCTCGAATTGAGTA
Locus tag: Shal_0776
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)

Position: -237
Score: 3.9
Sequence: TAATACCTAGGTGGTA
Locus tag: Shal_0176
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: Shal_0177
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Shal_0178
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Shal_0179
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Shal_0180
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
narK
Nitrate/nitrite antiporter
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)

Position: -119
Score: 4.7
Sequence: TACCCCTTGCGAGGTA
Locus tag: Shal_0716
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shal_0715
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shal_0714
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shal_0713
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shal_0712
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit

Position: -165
Score: 4.3
Sequence: TACCTATTTGTGTGTA
Position: -151
Score: 4.6
Sequence: TACCTCTAAATCGGTA
Locus tag: Shal_3305
Name: Shew_2655
Funciton: Conserved hypothetical protein
Shew_2655
Conserved hypothetical protein

Position: -98
Score: 4.7
Sequence: TACCTCGTTGGAGGTA
Locus tag: Shal_0886
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -194
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shal_2784
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shal_2785
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shal_2786
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB

Position: -105
Score: 4
Sequence: TATCGCTAATTAGGTA
Locus tag: Shal_3447
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shal_3448
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: Shal_3449
Name: SO3056
Funciton: Flavocytochrome c, heme submit
SO3058
Flavocytochrome c, flavin subunit
SO3057
Phenylalanine/histidine ammonia-lyase family protein
SO3056
Flavocytochrome c, heme submit

Position: -69
Score: 4.3
Sequence: TACCCCCTTCGATATA
Locus tag: Shal_2928
Name: dmsE
Funciton: Periplasmic decaheme cytochrome c, DsmE
Locus tag: Shal_2927
Name: dmsF
Funciton: Outer membrane protein, DmsF
Locus tag: Shal_2926
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: Shal_2925
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: Shal_2924
Name: dmsG
Funciton: Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG
dmsE
Periplasmic decaheme cytochrome c, DsmE
dmsF
Outer membrane protein, DmsF
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
dmsG
Dimethyl sulfoxide reductase chaperone/maturation protein, DmsG

Position: -182
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Shal_2783
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -159
Score: 4.7
Sequence: TACCTCCAACGAGGTA
Locus tag: Shal_0885
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shal_0884
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -260
Score: 4.8
Sequence: TACTCCTTTAGGGATA
Locus tag: Shal_0676
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted
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