Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_0646
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 35
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -106
Score: 4.5
Sequence: TACCGATTTAGGGGTA
Locus tag: Sama_1620
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sama_1621
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sama_1622
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sama_1623
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sama_1624
Name: napC2
Funciton: Cytochrome c-type protein NapC
napE2
Periplasmic nitrate reductase component NapE
napD2
Periplasmic nitrate reductase component NapD
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB2
Nitrate reductase cytochrome c550-type subunit
napC2
Cytochrome c-type protein NapC

Position: -160
Score: 4.9
Sequence: TACCCATTAAGTGGTA
Locus tag: Sama_0647
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sama_0646
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -35
Score: 5.2
Sequence: TACCTCTTTATAAGTA
Locus tag: Sama_0611
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)

Position: -101
Score: 5
Sequence: TACCACTTAATGGGTA
Locus tag: Sama_0648
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -134
Score: 4.5
Sequence: TACCCCAAAGTGGGTA
Locus tag: Sama_1371
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -192
Score: 4.9
Sequence: TACCCCTTTTGAAATA
Position: -133
Score: 5
Sequence: TACCCCCTATGAGGTA
Locus tag: Sama_1208
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Sama_1207
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Sama_1206
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB

Position: -212
Score: 4.4
Sequence: TATCTCCAAAGTGGTA
Locus tag: Sama_2990
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
SO3141
Nonaheme cytochrome c lipoprotein

Position: -77
Score: 4.5
Sequence: TACCACTTTATATATA
Locus tag: Sama_2228
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
mtrF
Decaheme cytochrome c MtrF

Position: -182
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Sama_1209
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -127
Score: 4.2
Sequence: TACACGTTTAGAGGTA
Locus tag: Sama_3524
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sama_3525
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: Sama_3526
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sama_3527
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sama_3528
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sama_3529
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sama_3530
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Sama_3531
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaB
Molybdenum cofactor biosynthesis protein MoaB
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -105
Score: 4.8
Sequence: TACCTCCTAGTGGGTA
Locus tag: Sama_2982
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sama_2983
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sama_2984
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Sama_2985
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Sama_2986
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit

Position: -123
Score: 4
Sequence: TACTCCTTTTGGCATA
Locus tag: Sama_3236
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
dnrN
Nitric oxide-dependent regulator DnrN

Position: -262
Score: 4.9
Sequence: TACCCATTTATGGGTA
Locus tag: Sama_0544
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted

Position: -145
Score: 4.5
Sequence: TACCACCTTGTAGGTA
Locus tag: Sama_2753
Name: nhaD
Funciton: Na+/H+ antiporter NhaD
nhaD
Na+/H+ antiporter NhaD

Position: -331
Score: 4.8
Sequence: TACCTCTTTAGGGGTG
Locus tag: Sama_3177
Name: psrA
Funciton: Polysulfide reductase, subunit A
Locus tag: Sama_3176
Name: psrB
Funciton: Polysulfide reductase, subunit B
Locus tag: Sama_3175
Name: psrC
Funciton: Polysulfide reductase, subunit C
psrA
Polysulfide reductase, subunit A
psrB
Polysulfide reductase, subunit B
psrC
Polysulfide reductase, subunit C
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