Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella sp MR-7

Properties
Regulator type: Transcription factor
TF locus tag: Shewmr7_3365
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 41
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -238
Score: 4.6
Sequence: TACCCCCTTGTAGATA
Position: -128
Score: 4.4
Sequence: CACCCATTAAGGAGTA
Locus tag: Shewmr7_2301
Name: narK
Funciton: Nitrate/nitrite antiporter
narK
Nitrate/nitrite antiporter

Position: -19
Score: 4.2
Sequence: TACCCGTTAAGGAGCA
Locus tag: Shewmr7_3621
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: Shewmr7_3620
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Fumarate reductase subunit B (EC 1.3.5.4)

Position: -137
Score: 4.4
Sequence: TACCGATTTGGAGGTA
Locus tag: Shewmr7_2137
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shewmr7_2136
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_2135
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_2134
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shewmr7_2133
Name: napC2
Funciton: Cytochrome c-type protein NapC
napE2
Periplasmic nitrate reductase component NapE
napD2
Periplasmic nitrate reductase component NapD
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB2
Nitrate reductase cytochrome c550-type subunit
napC2
Cytochrome c-type protein NapC

Position: -164
Score: 5.1
Sequence: TACCTCTTAGGGGGTA
Locus tag: Shewmr7_3364
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewmr7_3365
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -77
Score: 5.2
Sequence: TACCCCCTAAGAGGTA
Locus tag: Shewmr7_3363
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -132
Score: 4.8
Sequence: TACCTCAAAATAAGTA
Locus tag: Shewmr7_2668
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -95
Score: 4.4
Sequence: TACTCCATACGAGGTA
Locus tag: Shewmr7_3801
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
SO4520
Coproporphyrinogen III oxidase, oxygen-independent

Position: -118
Score: 4.9
Sequence: TACCTCTTGTGAGGTA
Locus tag: Shewmr7_3317
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_3318
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_3319
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewmr7_3320
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shewmr7_3321
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit

Position: -215
Score: 4.6
Sequence: TACCTCCAAAGATATA
Locus tag: Shewmr7_1421
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
SO3141
Nonaheme cytochrome c lipoprotein

Position: -203
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shewmr7_2578
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewmr7_2579
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewmr7_2580
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB

Position: -68
Score: 5.1
Sequence: TACCCCTTAATTGGTA
Locus tag: Shewmr7_2840
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -43
Score: 4.7
Sequence: TAACCCTTATTAAGTA
Locus tag: Shewmr7_3215
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)

Position: -78
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: Shewmr7_2680
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
mtrF
Decaheme cytochrome c MtrF

Position: -179
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Shewmr7_2577
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -134
Score: 4.6
Sequence: TACCTGTTTGGGGGTA
Locus tag: Shewmr7_3748
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewmr7_3747
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewmr7_3746
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewmr7_3745
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewmr7_3744
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3743
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3742
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -261
Score: 4.3
Sequence: TACCTCTTAATAGTTC
Locus tag: Shewmr7_2302
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Shewmr7_2303
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Shewmr7_2304
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Shewmr7_2305
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)

Position: -77
Score: 4.4
Sequence: TACTCATAAGGAGATA
Locus tag: Shewmr7_2495
Name: nnrS
Funciton: Heme-copper-containing inner membrane protein
nnrS
Heme-copper-containing inner membrane protein

Position: -127
Score: 4.7
Sequence: TACTCCCTTAGAGATA
Locus tag: Shewmr7_3627
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
dnrN
Nitric oxide-dependent regulator DnrN

Position: -217
Score: 4.2
Sequence: TAACTCTACAGAGTTA
Locus tag: Shewmr7_3412
Name: crp
Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp
crp
Cyclic AMP receptor protein, transcriptional regulator Crp

Position: -255
Score: 5.1
Sequence: TACCTCTTTAGTAGTA
Locus tag: Shewmr7_0761
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted
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