Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella sp ANA-3

Properties
Regulator type: Transcription factor
TF locus tag: Shewana3_0656
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -19
Score: 4.2
Sequence: TACCCGTTAAGGAGCA
Locus tag: Shewana3_0403
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: Shewana3_0404
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Fumarate reductase subunit B (EC 1.3.5.4)

Position: -163
Score: 5.1
Sequence: TACCTCTTAGGGGGTA
Locus tag: Shewana3_0657
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewana3_0656
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -77
Score: 4.5
Sequence: TACCTCTTTTTAGGTG
Locus tag: Shewana3_1489
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: Shewana3_1490
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: Shewana3_1491
Name: SO3056
Funciton: Flavocytochrome c, heme submit
SO3058
Flavocytochrome c, flavin subunit
SO3057
Phenylalanine/histidine ammonia-lyase family protein
SO3056
Flavocytochrome c, heme submit

Position: -95
Score: 4.4
Sequence: TACTCCATACGAGGTA
Locus tag: Shewana3_3926
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
SO4520
Coproporphyrinogen III oxidase, oxygen-independent

Position: -203
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: Shewana3_2676
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewana3_2677
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewana3_2678
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB

Position: -43
Score: 4.7
Sequence: TAACCCTTATTAAGTA
Locus tag: Shewana3_3318
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)

Position: -118
Score: 4.8
Sequence: TACCTCTTGCGAGGTA
Locus tag: Shewana3_3429
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewana3_3430
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewana3_3431
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewana3_3432
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: Shewana3_3433
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit

Position: -132
Score: 4.8
Sequence: TACCTCAAAATAAGTA
Locus tag: Shewana3_2775
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -77
Score: 5.2
Sequence: TACCCCCTAAGAGGTA
Locus tag: Shewana3_0658
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -216
Score: 4.6
Sequence: TACCTCCAAAGATATA
Locus tag: Shewana3_1409
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
SO3141
Nonaheme cytochrome c lipoprotein

Position: -68
Score: 5.1
Sequence: TACCCCTTAATTGGTA
Locus tag: Shewana3_2938
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -77
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: Shewana3_2787
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
mtrF
Decaheme cytochrome c MtrF

Position: -134
Score: 4.8
Sequence: TACCTGTTTAGGGGTA
Locus tag: Shewana3_0274
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewana3_0275
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewana3_0276
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewana3_0277
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewana3_0278
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewana3_0279
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewana3_0280
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -179
Score: 5.1
Sequence: TACCTCTAAAGAAATA
Locus tag: Shewana3_2675
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -77
Score: 4
Sequence: TACTCAAAAGGAGATA
Locus tag: Shewana3_2587
Name: nnrS
Funciton: Heme-copper-containing inner membrane protein
nnrS
Heme-copper-containing inner membrane protein

Position: -127
Score: 4.4
Sequence: TACTCACTTAGAGATA
Locus tag: Shewana3_0397
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
dnrN
Nitric oxide-dependent regulator DnrN

Position: -217
Score: 4.2
Sequence: TAACTCTACAGAGTTA
Locus tag: Shewana3_0617
Name: crp
Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp
crp
Cyclic AMP receptor protein, transcriptional regulator Crp

Position: -104
Score: 4.2
Sequence: CACCTAAAAAGAGGTA
Locus tag: Shewana3_1488
Name: SO3059
Funciton: Predicted transcriptional activator
SO3059
Predicted transcriptional activator

Position: -181
Score: 5.1
Sequence: TACCCCTTTAGGGATA
Locus tag: Shewana3_3619
Name: psrA
Funciton: Polysulfide reductase, subunit A
Locus tag: Shewana3_3618
Name: psrB
Funciton: Polysulfide reductase, subunit B
Locus tag: Shewana3_3617
Name: psrC
Funciton: Polysulfide reductase, subunit C
psrA
Polysulfide reductase, subunit A
psrB
Polysulfide reductase, subunit B
psrC
Polysulfide reductase, subunit C

Position: -255
Score: 5.1
Sequence: TACCTCTTTAGTAGTA
Locus tag: Shewana3_0733
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted
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