Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Shewanella oneidensis MR-1

Properties
Regulator type: Transcription factor
TF locus tag: SO3982
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Shewanellaceae
Statistics of regulated genes:
- Genes 39
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 249 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -199
Score: 5.1
Sequence: TACCTCTTAGGGGGTA
Locus tag: SO3981
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: SO3982
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -77
Score: 4.3
Sequence: TACCTCCTTTTAGGTG
Locus tag: SO3058
Name: SO3058
Funciton: Flavocytochrome c, flavin subunit
Locus tag: SO3057
Name: SO3057
Funciton: Phenylalanine/histidine ammonia-lyase family protein
Locus tag: SO3056
Name: SO3056
Funciton: Flavocytochrome c, heme submit
SO3058
Flavocytochrome c, flavin subunit
SO3057
Phenylalanine/histidine ammonia-lyase family protein
SO3056
Flavocytochrome c, heme submit

Position: -95
Score: 4.4
Sequence: TACTCCATTCGAGGTA
Locus tag: SO4520
Name: SO4520
Funciton: Coproporphyrinogen III oxidase, oxygen-independent
SO4520
Coproporphyrinogen III oxidase, oxygen-independent

Position: -43
Score: 4.5
Sequence: TATCCCTTATTAAGTA
Locus tag: SO0970
Name: fccA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
fccA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)

Position: -135
Score: 4.6
Sequence: TACCTAAAAATAAGTA
Locus tag: SO1673
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -95
Score: 5.2
Sequence: TACCCCCTAAGAGGTA
Locus tag: SO3980
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -205
Score: 4.3
Sequence: TACTTCCAAAGATATA
Locus tag: SO3140.1
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Locus tag: SO3140.2
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
Locus tag: SO3140.3
Name: SO3141
Funciton: Nonaheme cytochrome c lipoprotein
SO3141
Nonaheme cytochrome c lipoprotein
SO3141
Nonaheme cytochrome c lipoprotein
SO3141
Nonaheme cytochrome c lipoprotein

Position: -68
Score: 5.1
Sequence: TACCCCTTAATTGGTA
Locus tag: SO1490
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -80
Score: 4.9
Sequence: TACCACTTTATAAGTA
Locus tag: SO1659
Name: mtrF
Funciton: Decaheme cytochrome c MtrF
mtrF
Decaheme cytochrome c MtrF

Position: -78
Score: 4.2
Sequence: TACTCATAAGGGGATA
Locus tag: SO2805
Name: nnrS
Funciton: Heme-copper-containing inner membrane protein
nnrS
Heme-copper-containing inner membrane protein

Position: -167
Score: 4.8
Sequence: TACCTGTTTAGGGGTA
Locus tag: SO4452
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: SO4451
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: SO4450
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: SO4449
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: SO4448
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: SO4447
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: SO4446
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -119
Score: 4.9
Sequence: TACCTCTTGTGAGGTA
Locus tag: SO0849
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: SO0848
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: SO0847
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: SO0846
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: SO0845
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit

Position: -217
Score: 4.2
Sequence: TAACTCTACAGAGTTA
Locus tag: SO0624
Name: crp
Funciton: Cyclic AMP receptor protein, transcriptional regulator Crp
crp
Cyclic AMP receptor protein, transcriptional regulator Crp

Position: -104
Score: 3.9
Sequence: CACCTAAAAGGAGGTA
Locus tag: SO3059
Name: SO3059
Funciton: Predicted transcriptional activator
SO3059
Predicted transcriptional activator

Position: -204
Score: 5.2
Sequence: TACCTCTTTAGAAATA
Locus tag: SO1778
Name: mtrC
Funciton: Surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: SO1777
Name: mtrA
Funciton: Periplasmic decaheme cytochrome c, MtrA
Locus tag: SO1776
Name: mtrB
Funciton: Outer membrane protein, MtrB
mtrC
Surface localized decaheme cytochrome c lipoprotein, MtrC
mtrA
Periplasmic decaheme cytochrome c, MtrA
mtrB
Outer membrane protein, MtrB

Position: -19
Score: 4.2
Sequence: TACCCGTTAAGGAGCA
Locus tag: SO0398
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: SO0399
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Fumarate reductase subunit B (EC 1.3.5.4)

Position: -179
Score: 4.8
Sequence: TACCTCAAAAGAAATA
Locus tag: SO1779
Name: omcA
Funciton: Surface localized decaheme cytochrome c lipoprotein, OmcA
omcA
Surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -255
Score: 5.2
Sequence: TACCTCTTTAGTGGTA
Locus tag: SO3896
Name: omp35
Funciton: Outer membrane porin, predicted
omp35
Outer membrane porin, predicted

Position: -179
Score: 5
Sequence: TACCCCTTTAGGAATA
Locus tag: SO4062
Name: psrA
Funciton: Polysulfide reductase, subunit A
Locus tag: SO4061
Name: psrB
Funciton: Polysulfide reductase, subunit B
Locus tag: SO4060
Name: psrC
Funciton: Polysulfide reductase, subunit C
psrA
Polysulfide reductase, subunit A
psrB
Polysulfide reductase, subunit B
psrC
Polysulfide reductase, subunit C
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