Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Aggregatibacter aphrophilus NJ8700

Properties
Regulator type: Transcription factor
TF locus tag: NT05HA_1602
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Pasteurellales
Statistics of regulated genes:
- Genes 47
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 114 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -153
Score: 5
Sequence: TAACTTTTTTGAGGTA
Locus tag: NT05HA_1299
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: NT05HA_1300
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Locus tag: NT05HA_1301
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: NT05HA_1302
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
frdD
Fumarate reductase subunit D (EC 1.3.5.4)

Position: -117
Score: 3.7
Sequence: TACCTATAATGTTGTA
Locus tag: NT05HA_1388
Name: arcA
Funciton: Anaerobic metabolism transcriptional regulator arcA, OmpR family
arcA
Anaerobic metabolism transcriptional regulator arcA, OmpR family

Position: -31
Score: 4.6
Sequence: TACCCATTTTTAATTA
Locus tag: NT05HA_1109
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
mdh
Malate dehydrogenase (EC 1.1.1.37)

Position: -68
Score: 4.4
Sequence: TAACCAATTATGGTTA
Locus tag: NT05HA_0856
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: NT05HA_0857
Name: torZ
Funciton: Biotin sulfoxide reductase
torY
Biotin sulfoxide reductase, cytochrome c-type
torZ
Biotin sulfoxide reductase

Position: -49
Score: 3.7
Sequence: TAATTCTAACCAGTTA
Locus tag: NT05HA_1312
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -101
Score: 4.1
Sequence: TACTGCTAAAGAGTTA
Locus tag: NT05HA_0026
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: NT05HA_0027
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: NT05HA_0028
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: NT05HA_0029
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: NT05HA_0030
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: NT05HA_0031
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: NT05HA_0032
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: NT05HA_0033
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: NT05HA_0034
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -155
Score: 4.2
Sequence: TACCCTGTTATAGTGA
Locus tag: NT05HA_2016
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: NT05HA_2015
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: NT05HA_2014
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: NT05HA_2013
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: NT05HA_2012
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: NT05HA_2011
Name: napC
Funciton: Cytochrome c-type protein NapC
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -250
Score: 4.1
Sequence: TACCTAAAAATTGTTA
Position: -190
Score: 4.3
Sequence: TACTTATAAATGGGTA
Locus tag: NT05HA_0037
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: NT05HA_0038
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: NT05HA_0039
Name: nrfC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: NT05HA_0040
Name: nrfD
Funciton: Nitrite reductase, NrfD component
nrfA
Nitrite reductase, cytochrome c(552)
nrfB
Cytochrome c-type protein NrfB precursor
nrfC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component

Position: -202
Score: 4.1
Sequence: TACTCCTATCTAATTA
Locus tag: NT05HA_0112
Name: focA
Funciton: Formate transporter, FNT family
Locus tag: NT05HA_0113
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
focA
Formate transporter, FNT family
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -258
Score: 4.6
Sequence: TACTTATTTGGGGTTA
Locus tag: NT05HA_1350
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: NT05HA_1349
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

Position: -371
Score: 4.6
Sequence: TACCTCTTTGTGATTA
Locus tag: NT05HA_1617
Name: nqrA
Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Locus tag: NT05HA_1616
Name: nqrB
Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
Locus tag: NT05HA_1615
Name: nqrC
Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
Locus tag: NT05HA_1614
Name: nqrD
Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
Locus tag: NT05HA_1613
Name: nqrE
Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
Locus tag: NT05HA_1612
Name: nqrF
Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
nqrA
Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
nqrB
Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
nqrC
Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
nqrD
Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
nqrE
Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
nqrF
Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)

Position: -190
Score: 4.6
Sequence: TACCTATTTCTAATTA
Locus tag: NT05HA_0812
Name: hybO
Funciton: Hydrogenase II, small subunit (EC 1.12.99.6)
Locus tag: NT05HA_0813
Name: hybA
Funciton: Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6)
Locus tag: NT05HA_0814
Name: hybB
Funciton: Hydrogenase II, cytochrome b type component (EC 1.12.99.6)
Locus tag: NT05HA_0815
Name: hybC
Funciton: Hydrogenase II, large subunit (EC 1.12.99.6)
Locus tag: NT05HA_0816
Name: hybD
Funciton: Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6)
Locus tag: NT05HA_0817
Name: hybE
Funciton: Hydrogenase II, maturation chaperone (EC 1.12.99.6)
Locus tag: NT05HA_0818
Name: hybG
Funciton: Hydrogenase II, accessory protein (EC 1.12.99.6)
hybO
Hydrogenase II, small subunit (EC 1.12.99.6)
hybA
Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6)
hybB
Hydrogenase II, cytochrome b type component (EC 1.12.99.6)
hybC
Hydrogenase II, large subunit (EC 1.12.99.6)
hybD
Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6)
hybE
Hydrogenase II, maturation chaperone (EC 1.12.99.6)
hybG
Hydrogenase II, accessory protein (EC 1.12.99.6)

Position: -35
Score: 4.1
Sequence: TAACCCGTTTTGATTA
Locus tag: NT05HA_1781
Name: eno
Funciton: Enolase (EC 4.2.1.11)
eno
Enolase (EC 4.2.1.11)

Position: -70
Score: 4.1
Sequence: TAACAGTTTTTAGGTA
Position: -20
Score: 4
Sequence: TAACACTAAAGAGGTG
Locus tag: NT05HA_1606
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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