Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRA0849
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 37
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -205
Score: 4.8
Sequence: TAACCCTTTAGTAGTA
Locus tag: PBPRA2525
Name: nirB3
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
nirB3
Nitrite reductase large subunit (EC 1.7.1.4)

Position: -209
Score: 5
Sequence: TACCCAATAAGGGGTA
Locus tag: PBPRA1258
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -164
Score: 4.4
Sequence: TAGCCCTAAGTGGGTA
Locus tag: PBPRA0851
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: PBPRA0852
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: PBPRA0853
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: PBPRA0854
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: PBPRA0855
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -143
Score: 4.4
Sequence: TACCACTAAAGGGGAG
Locus tag: PBPRA3391
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: PBPRA3392
Name: dcuA
Funciton: C4-dicarboxylate transporter
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
dcuA
C4-dicarboxylate transporter

Position: -99
Score: 4.7
Sequence: TACCCCTTTAGGGTTG
Locus tag: PBPRA3485
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)

Position: -286
Score: 4.5
Sequence: TACTCTTTAAGTGGTA
Locus tag: PBPRB0331
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
Locus tag: PBPRB0332
Name: dmsX
Funciton: Predicted ferredoxin
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
dmsX
Predicted ferredoxin

Position: -93
Score: 4.7
Sequence: TACCACTTAAAGAGTA
Locus tag: PBPRB0330
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)

Position: -428
Score: 4.8
Sequence: TACCCCTTATTGGGTA
Position: -304
Score: 4.6
Sequence: TGCTACTTAAGGGGTA
Locus tag: PBPRA1259
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: PBPRA1260
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: PBPRA1261
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: PBPRA1262
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: PBPRA1263
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: PBPRA1264
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfX
Nitrite reductase, predicted component NrfX
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF

Position: -106
Score: 5.1
Sequence: TACCCCTTTAGGGCTA
Locus tag: PBPRA1428
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: PBPRA1427
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: PBPRA1426
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: PBPRA1425
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -262
Score: 4.9
Sequence: TACTACTAAAGGGTTA
Locus tag: PBPRA2524
Name: cysG2
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: PBPRA2523
Name: nirB2
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: PBPRA2522
Name: nirD2
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: PBPRA2521
Name: narK2
Funciton: Nitrate/nitrite antiporter
cysG2
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB2
Nitrite reductase large subunit (EC 1.7.1.4)
nirD2
Nitrite reductase small subunit (EC 1.7.1.4)
narK2
Nitrate/nitrite antiporter

Position: -156
Score: 4
Sequence: TTTTACTATAGGGGTA
Locus tag: PBPRA0948
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: PBPRA0949
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: PBPRA0950
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: PBPRA0951
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: PBPRA0952
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: PBPRA0953
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: PBPRA0954
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: PBPRA0955
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -168
Score: 4.6
Sequence: TACCCACTTAGGGCTA
Position: -65
Score: 4.3
Sequence: TAATACTAAAGTATTA
Locus tag: PBPRA0850
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: PBPRA0849
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD