Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Vibrio salmonicida LFI1238

Properties
Regulator type: Transcription factor
TF locus tag: VSAL_I2370
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 29
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -152
Score: 4.6
Sequence: CACCCCATTAGTGGTA
Locus tag: VSAL_I2788
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: VSAL_I2789
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: VSAL_I2790
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: VSAL_I2791
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
frdD
Fumarate reductase subunit D (EC 1.3.5.4)

Position: -117
Score: 4.6
Sequence: TACCTCATAATGGTTA
Locus tag: VSAL_I2369
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VSAL_I2370
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -279
Score: 4.5
Sequence: TACCACTTTTGTGATA
Position: -192
Score: 4.8
Sequence: TAATACTTTAGTGGTA
Locus tag: VSAL_I1997
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -141
Score: 4.9
Sequence: TACCCCTAAAGAGGTG
Locus tag: VSAL_I2806
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)

Position: -132
Score: 4.8
Sequence: TACCACTTTATGGTTA
Locus tag: VSAL_I2928
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)

Position: -63
Score: 4.3
Sequence: TACCACTTTAGGACTG
Locus tag: VSAL_I1571
Name: fnr
Funciton: Fumarate and nitrate reduction regulatory protein, Crp family
fnr
Fumarate and nitrate reduction regulatory protein, Crp family

Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VSAL_I1955
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -316
Score: 4.7
Sequence: TACCACTAAAGTATTA
Position: -229
Score: 4.5
Sequence: TATCACAAAAGTGGTA
Locus tag: VSAL_I1998
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VSAL_I1999
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VSAL_I2000
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VSAL_I2001
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VSAL_I2002
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VSAL_I2003
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfX
Nitrite reductase, predicted component NrfX
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF

Position: -87
Score: 4.6
Sequence: TAACCATTATGAGGTA
Locus tag: VSAL_I2368
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VSAL_I2367
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD

Position: -217
Score: 4
Sequence: TACAACGAAAGTGGTA
Locus tag: VSAL_I1855
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -190
Score: 4.9
Sequence: TACCCATAAGGTGGTA
Locus tag: VSAL_I2281
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VSAL_I2280
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VSAL_I2279
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VSAL_I2278
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VSAL_I2277
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VSAL_I2276
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VSAL_I2275
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VSAL_I2274
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VSAL_I2273
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD