Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Vibrio fischeri ES114

Properties
Regulator type: Transcription factor
TF locus tag: VF_1909
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 50
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -256
Score: 4.5
Sequence: TACCACTTTATAGATA
Locus tag: VF_0940
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VF_0941
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VF_0942
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VF_0943
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE

Position: -66
Score: 4.9
Sequence: TAACCCCAAAGTGGTA
Locus tag: VF_A0189
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VF_A0188
Name: torZ
Funciton: Biotin sulfoxide reductase
torY
Biotin sulfoxide reductase, cytochrome c-type
torZ
Biotin sulfoxide reductase

Position: -194
Score: 4.5
Sequence: TGCCCCATTAGTGGTA
Locus tag: VF_2334
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: VF_2335
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: VF_2336
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: VF_2337
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
frdD
Fumarate reductase subunit D (EC 1.3.5.4)

Position: -269
Score: 4.6
Sequence: TAATACTTATGGGGTA
Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VF_1590
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -116
Score: 4.7
Sequence: TACCCCATAATGGTTA
Locus tag: VF_1908
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VF_1909
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -279
Score: 4.3
Sequence: TACTCCTTTTGTGATA
Position: -191
Score: 5.2
Sequence: TAACACTTAAGAGGTA
Position: -101
Score: 4.7
Sequence: TACCTCTTAATTAGTA
Locus tag: VF_1554
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -87
Score: 4.7
Sequence: TAACCATTATGGGGTA
Locus tag: VF_1907
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VF_1906
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VF_1905
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VF_1904
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VF_1903
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -115
Score: 4.7
Sequence: TACCACCTTAGAGCTA
Locus tag: VF_0776
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VF_0775
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VF_0774
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VF_0773
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -62
Score: 4.2
Sequence: TACCACTTTAGTGCGA
Locus tag: VF_1308
Name: fnr
Funciton: Fumarate and nitrate reduction regulatory protein, Crp family
fnr
Fumarate and nitrate reduction regulatory protein, Crp family

Position: -140
Score: 4.9
Sequence: TACCACTAAAGAGGTG
Locus tag: VF_2353
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VF_2354
Name: dcuA
Funciton: C4-dicarboxylate transporter
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
dcuA
C4-dicarboxylate transporter

Position: -192
Score: 4.8
Sequence: TACCTACAAAGTGGTA
Locus tag: VF_1824
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VF_1823
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VF_1822
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VF_1821
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VF_1820
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VF_1819
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VF_1818
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VF_1817
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VF_1816
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -125
Score: 4.8
Sequence: TACCACTTTATGGTTA
Locus tag: VF_2478
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)

Position: -257
Score: 4.6
Sequence: TTACTCTTTAGGGGTA
Locus tag: VF_A0297
Name: torE
Funciton: Trimethylamine N-oxide reductase, component TorE
Locus tag: VF_A0298
Name: torC
Funciton: Trimethylamine N-oxide reductase, component TorC
Locus tag: VF_A0299
Name: torA
Funciton: Trimethylamine N-oxide reductase, component TorA
torE
Trimethylamine N-oxide reductase, component TorE
torC
Trimethylamine N-oxide reductase, component TorC
torA
Trimethylamine N-oxide reductase, component TorA

Position: -265
Score: 4.5
Sequence: TACCTCTCAATGGGTA
Locus tag: VF_A0083
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
Locus tag: VF_A0084
Name: dmsX
Funciton: Predicted ferredoxin
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
dmsX
Predicted ferredoxin

Position: -86
Score: 4.7
Sequence: TACCCATTGAGAGGTA
Locus tag: VF_A0082
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: VF_A0081
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: VF_A0080
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)

Position: -294
Score: 5.1
Sequence: TACCTCTTAAGTGTTA
Position: -206
Score: 4.3
Sequence: TATCACAAAAGGAGTA
Locus tag: VF_1553
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VF_1552
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VF_1551
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VF_1550
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VF_1549
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VF_1548
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfX
Nitrite reductase, predicted component NrfX
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
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