Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Vibrio shilonii AK1

Properties
Regulator type: Transcription factor
TF locus tag: VSAK1_22419
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 50
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -199
Score: 4.2
Sequence: TTACCCTTAATGGTTA
Position: -185
Score: 4.4
Sequence: TACTACTAAGTAGGTA
Locus tag: VSAK1_03569
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -293
Score: 4.3
Sequence: TACTTCTTTTGAGTTA
Locus tag: VSAK1_03680
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VSAK1_03685
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VSAK1_03690
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VSAK1_03695
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VSAK1_03700
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaB
Molybdenum cofactor biosynthesis protein MoaB
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE

Position: -105
Score: 4.8
Sequence: CACCTCTAAAGTGGTA
Locus tag: VSAK1_21639
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -144
Score: 5.3
Sequence: TACCACTTTAGTGGTA
Locus tag: VSAK1_03730
Name: nirB3
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
nirB3
Nitrite reductase large subunit (EC 1.7.1.4)

Position: -61
Score: 4.3
Sequence: CTACCCTTAAGGGGTA
Locus tag: VSAK1_11585
Name: fnr
Funciton: Fumarate and nitrate reduction regulatory protein, Crp family
fnr
Fumarate and nitrate reduction regulatory protein, Crp family

Position: -123
Score: 5
Sequence: TAACCCCTAAGAGGTA
Locus tag: VSAK1_22409
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VSAK1_22404
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VSAK1_22399
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VSAK1_22394
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VSAK1_22389
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -108
Score: 4
Sequence: TACCACTTTAGAGTAG
Position: -18
Score: 4.4
Sequence: TAACACTTAGGTATTA
Locus tag: VSAK1_05765
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_05770
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_05775
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VSAK1_05780
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -111
Score: 4.4
Sequence: TAACCCTAAGTGGTTA
Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VSAK1_00285
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -277
Score: 4.3
Sequence: TTACTCTAAAGGGTTA
Locus tag: VSAK1_04362
Name: torE
Funciton: Trimethylamine N-oxide reductase, component TorE
Locus tag: VSAK1_04367
Name: torC
Funciton: Trimethylamine N-oxide reductase, component TorC
Locus tag: VSAK1_04372
Name: torA
Funciton: Trimethylamine N-oxide reductase, component TorA
torE
Trimethylamine N-oxide reductase, component TorE
torC
Trimethylamine N-oxide reductase, component TorC
torA
Trimethylamine N-oxide reductase, component TorA

Position: -99
Score: 4.7
Sequence: TAACCATTAAGTAGTA
Locus tag: VSAK1_04530
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: VSAK1_04535
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: VSAK1_04540
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: VSAK1_04545
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
Locus tag: VSAK1_04550
Name: dmsX
Funciton: Predicted ferredoxin
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
dmsX
Predicted ferredoxin

Position: -206
Score: 5.2
Sequence: TACCCCTTTAGGGTTA
Locus tag: VSAK1_05600
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -133
Score: 4.9
Sequence: TACCTCTTAGGGGTTA
Locus tag: VSAK1_22414
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VSAK1_22419
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -304
Score: 5.2
Sequence: TAACCCTAAAGGGGTA
Position: -196
Score: 4.8
Sequence: TACCTCTAAAGTGATA
Locus tag: VSAK1_05595
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VSAK1_05590
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VSAK1_05585
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VSAK1_05580
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VSAK1_05575
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF

Position: -61
Score: 4.8
Sequence: TACTACTAAAGGAGTA
Locus tag: VSAK1_18027
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VSAK1_18032
Name: torZ
Funciton: Biotin sulfoxide reductase
torY
Biotin sulfoxide reductase, cytochrome c-type
torZ
Biotin sulfoxide reductase

Position: -285
Score: 5.3
Sequence: TACCACTaaAGTGGTA
Locus tag: VSAK1_03740
Name: cysG2
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: VSAK1_03745
Name: nirB2
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_03750
Name: nirD2
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_03755
Name: narK2
Funciton: Nitrate/nitrite antiporter
cysG2
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB2
Nitrite reductase large subunit (EC 1.7.1.4)
nirD2
Nitrite reductase small subunit (EC 1.7.1.4)
narK2
Nitrate/nitrite antiporter

Position: -145
Score: 5.1
Sequence: TACCACTTTATGGGTA
Locus tag: VSAK1_03174
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VSAK1_03179
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VSAK1_03184
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VSAK1_03189
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VSAK1_03194
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VSAK1_03199
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VSAK1_03204
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VSAK1_03209
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VSAK1_03214
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH
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