Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VPA1195
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 44
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -108
Score: 4.1
Sequence: TACCCCTTTAGGGTAG
Position: -18
Score: 4.7
Sequence: TAACCCTTAGGAAGTA
Locus tag: VPA0987
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VPA0986
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VPA0985
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VPA0984
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -301
Score: 5.3
Sequence: TACCCCTAAAGTGGTA
Position: -197
Score: 3.9
Sequence: TACCTCTTAGGAATAA
Locus tag: VP1928
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VP1927
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VP1926
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VP1925
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VP1924
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VP1923
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfX
Nitrite reductase, predicted component NrfX
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF

Position: -192
Score: 4.3
Sequence: CACTACTTTGGTGGTA
Locus tag: VP2121
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -113
Score: 5.1
Sequence: TACCCCTAAATGGGTA
Locus tag: VPA0566
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -123
Score: 5.1
Sequence: TACCTCCTAAGAGGTA
Locus tag: VPA1197
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VPA1198
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VPA1199
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VPA1200
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VPA1201
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -225
Score: 4.7
Sequence: TACCCACAAAGGGTTA
Locus tag: VP2863
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VP2864
Name: dcuA
Funciton: C4-dicarboxylate transporter
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
dcuA
C4-dicarboxylate transporter

Position: -218
Score: 4.4
Sequence: TACTCACTAAGCGGTA
Locus tag: VP2096
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VP2095
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VP2094
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VP2093
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VP2092
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaB
Molybdenum cofactor biosynthesis protein MoaB
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE

Position: -260
Score: 4.5
Sequence: TACTACTTTGGAGTTA
Locus tag: VPA1058
Name: nrtC
Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VPA1057
Name: nrtB
Funciton: Nitrate ABC transporter, permease protein
Locus tag: VPA1056
Name: nrtD
Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VPA1055
Name: nirB4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VPA1054
Name: nirD4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
nrtC
Nitrate ABC transporter, substrate-binding protein
nrtB
Nitrate ABC transporter, permease protein
nrtD
Nitrate ABC transporter, ATP-binding protein
nirB4
Nitrite reductase large subunit (EC 1.7.1.4)
nirD4
Nitrite reductase large subunit (EC 1.7.1.4)

Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VP0994
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -293
Score: 4.1
Sequence: TTATTCCTAAGAGGTA
Position: -189
Score: 5.4
Sequence: TACCACTTTAGGGGTA
Locus tag: VP1929
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -140
Score: 5.1
Sequence: TACCTCTTAGGAGGTA
Locus tag: VPA1196
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VPA1195
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -60
Score: 4.5
Sequence: TACCTACAAAGTAGTA
Locus tag: VPA0127
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VPA0128
Name: torZ
Funciton: Biotin sulfoxide reductase
torY
Biotin sulfoxide reductase, cytochrome c-type
torZ
Biotin sulfoxide reductase

Position: -146
Score: 3.9
Sequence: TAGCCACTTATGGTTA
Locus tag: VP2223
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VP2222
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VP2221
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VP2220
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VP2219
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VP2218
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VP2217
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VP2216
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VP2215
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH
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