Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type: Transcription factor
TF locus tag: VIBHAR_05381
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 40
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -277
Score: 5.3
Sequence: TACCTCTAAAGGGGTA
Position: -175
Score: 3.8
Sequence: TACCTCTTATGAATAA
Locus tag: VIBHAR_02726
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VIBHAR_02725
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02724
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02723
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VIBHAR_02722
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VIBHAR_02721
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VIBHAR_02720
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfX
Nitrite reductase, predicted component NrfX
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF

Position: -225
Score: 4.9
Sequence: TACCACCAAAGGGTTA
Locus tag: VIBHAR_00154
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VIBHAR_00155
Name: dcuA
Funciton: C4-dicarboxylate transporter
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
dcuA
C4-dicarboxylate transporter

Position: -112
Score: 5.1
Sequence: TACCTCTAAGGGGGTA
Locus tag: VIBHAR_05412
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -122
Score: 5.1
Sequence: TACCTCCTAAGAGGTA
Locus tag: VIBHAR_05379
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VIBHAR_05378
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VIBHAR_05377
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VIBHAR_05376
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VIBHAR_05375
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -235
Score: 4.4
Sequence: TACTCACTAAGCGGTA
Locus tag: VIBHAR_02954
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VIBHAR_02953
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VIBHAR_02952
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VIBHAR_02951
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VIBHAR_02950
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaB
Molybdenum cofactor biosynthesis protein MoaB
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE

Position: -191
Score: 4.4
Sequence: CACTACTTTGGGGGTA
Locus tag: VIBHAR_03018
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -276
Score: 4.9
Sequence: TACCACTTTGGGGTTA
Locus tag: VIBHAR_05588
Name: nrtC
Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VIBHAR_05589
Name: nrtB
Funciton: Nitrate ABC transporter, permease protein
Locus tag: VIBHAR_05590
Name: nrtD
Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VIBHAR_05591
Name: nirB4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VIBHAR_05592
Name: nirD4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
nrtC
Nitrate ABC transporter, substrate-binding protein
nrtB
Nitrate ABC transporter, permease protein
nrtD
Nitrate ABC transporter, ATP-binding protein
nirB4
Nitrite reductase large subunit (EC 1.7.1.4)
nirD4
Nitrite reductase large subunit (EC 1.7.1.4)

Position: -188
Score: 5.1
Sequence: TACCTCTTAGGAGGTA
Locus tag: VIBHAR_05380
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VIBHAR_05381
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -207
Score: 5.3
Sequence: TACCCCTTTAGAGGTA
Locus tag: VIBHAR_02727
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -61
Score: 5
Sequence: TACTACTAAAGAGGTA
Locus tag: VIBHAR_06847
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VIBHAR_06846
Name: torZ
Funciton: Biotin sulfoxide reductase
torY
Biotin sulfoxide reductase, cytochrome c-type
torZ
Biotin sulfoxide reductase

Position: -146
Score: 3.9
Sequence: TAATCACTTATGGTTA
Locus tag: VIBHAR_03135
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VIBHAR_03134
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VIBHAR_03133
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VIBHAR_03132
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VIBHAR_03131
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VIBHAR_03130
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VIBHAR_03129
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VIBHAR_03128
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VIBHAR_03127
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH
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