Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV20718
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 39
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -208
Score: 4.6
Sequence: CACCACTTTGGGGGTA
Locus tag: VV1_3111
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -628
Score: 5.3
Sequence: TACCCCCTAAGGGGTA
Locus tag: VV20720
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VV20721
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VV20722
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VV20723
Name: napC
Funciton: Cytochrome c-type protein NapC
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -225
Score: 5.1
Sequence: TACCCCTTTAGAGTTA
Locus tag: VV1_1249
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VV1_1248
Name: dcuA
Funciton: C4-dicarboxylate transporter
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
dcuA
C4-dicarboxylate transporter

Position: -256
Score: 4.4
Sequence: TACTCACAAGGTGGTA
Locus tag: VV1_3088
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VV1_3087
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VV1_3086
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VV1_3085
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VV1_3084
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaB
Molybdenum cofactor biosynthesis protein MoaB
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein MoaD
moaE
Molybdenum cofactor biosynthesis protein MoaE

Position: -106
Score: 4.1
Sequence: TACCCCTTTAGGGTAG
Position: -18
Score: 4.7
Sequence: TAACCCTTAGGAAGTA
Locus tag: VV20370
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VV20369
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VV20368
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VV20367
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -305
Score: 5.4
Sequence: TACCCCTAAAGGGGTA
Position: -203
Score: 3.7
Sequence: TACTACTAAAGAGTAG
Locus tag: VV1_3034
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VV1_3033
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VV1_3032
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VV1_3031
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VV1_3030
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
nrfB
Cytochrome c-type protein NrfB precursor
nfrC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfX
Nitrite reductase, predicted component NrfX

Position: -155
Score: 4.9
Sequence: TACTACTTTGGGGGTA
Locus tag: VV20393
Name: nrtC
Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VV20392
Name: nrtB
Funciton: Nitrate ABC transporter, permease protein
Locus tag: VV20391
Name: nrtD
Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VV20390
Name: nirB4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VV20389
Name: nirD4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
nrtC
Nitrate ABC transporter, substrate-binding protein
nrtB
Nitrate ABC transporter, permease protein
nrtD
Nitrate ABC transporter, ATP-binding protein
nirB4
Nitrite reductase large subunit (EC 1.7.1.4)
nirD4
Nitrite reductase large subunit (EC 1.7.1.4)

Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VV1_2098
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -146
Score: 4.3
Sequence: TCACTCTATAGAGGTA
Locus tag: VV1_1961
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VV1_1962
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VV1_1963
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VV1_1964
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VV1_1965
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VV1_1966
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VV1_1967
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VV1_1968
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VV1_1969
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -192
Score: 5.4
Sequence: TACCCCTTTAGGGGTA
Locus tag: VV1_3035
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
nrfA
Nitrite reductase, cytochrome c(552)

Position: -189
Score: 5.3
Sequence: TACCCCTTAGGGGGTA
Locus tag: VV20719
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VV20718
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
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