Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of PaaR in Delftia acidovorans SPH-1

Properties
Regulator type: Transcription factor
TF locus tag: Daci_0571, Daci_0807
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR - Comamonadaceae
Statistics of regulated genes:
- Genes 15
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -111
Score: 6
Sequence: ATTGACCGACCGGACGGTAGGA
Locus tag: Daci_0808
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
paaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ

Position: -63
Score: 4.6
Sequence: ATAATCCTACCGTCCGGTCGGT
Position: -59
Score: 5.7
Sequence: TCCTACCGTCCGGTCGGTCAAT
Locus tag: Daci_0809
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Daci_0810
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Daci_0811
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Daci_0812
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Daci_0813
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Daci_0814
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
Phenylacetate-CoA oxygenase, PaaD subunit
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)

Position: -71
Score: 5.2
Sequence: ATTTACCGACCATTCGGTAAAT
Locus tag: Daci_0568
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Daci_0569
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: Daci_0570
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Daci_0571
Name: paaR
Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
Locus tag: Daci_0572
Name: livK
Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component
Locus tag: Daci_0573
Name: livH
Funciton: Putative branched-chain amino acid ABC transporter, permease component
Locus tag: Daci_0574
Name: livM
Funciton: Putative branched-chain amino acid ABC transporter, ATPase component
Locus tag: Daci_0575
Name: livF
Funciton: Putative branched-chain amino acid ABC transporter, permease component 2
paaF
Enoyl-CoA hydratase (EC 4.2.1.17)
paaY
thioesterase superfamily protein
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaR
Transcriptional regulator of phenylacetic acid degradation, TetR family
livK
Putative branched-chain amino acid ABC transporter, substrate-binding component
livH
Putative branched-chain amino acid ABC transporter, permease component
livM
Putative branched-chain amino acid ABC transporter, ATPase component
livF
Putative branched-chain amino acid ABC transporter, permease component 2
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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