Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of PaaR2 in Deinococcus geothermalis DSM 11300

Properties
Regulator type: Transcription factor
TF locus tag: Dgeo_0117
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR2 - Deinococcus-Thermus
Statistics of regulated genes:
- Genes 14
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -90
Score: 6.2
Sequence: CTAACGAGCGTTAGCTAG
Locus tag: Dgeo_2338
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Dgeo_2339
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Dgeo_2340
Name: DR0031
Funciton: hypothetical protein
Locus tag: Dgeo_2341
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
DR0031
hypothetical protein
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)

Position: -89
Score: 5.3
Sequence: CTAACGACCGTTCGGGAG
Locus tag: Dgeo_0467
Name: accB
Funciton: Biotin carboxyl carrier protein of acetyl-CoA carboxylase
Locus tag: Dgeo_0466
Name: accC
Funciton: Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)
accB
Biotin carboxyl carrier protein of acetyl-CoA carboxylase
accC
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)

Position: -61
Score: 4.8
Sequence: CAAACGGACGTTCACTTG
Locus tag: Dgeo_0117
Name: paaR
Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
paaR
Transcriptional regulator of phenylacetic acid degradation, TetR family

Position: -35
Score: 5.6
Sequence: CCAACGAACGCTTGTTTG
Locus tag: Dgeo_1253
Name: hmgcL
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Dgeo_1254
Name: maoC
Funciton: enoyl-CoA hydratase-like enzyme
hmgcL
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
maoC
enoyl-CoA hydratase-like enzyme

Position: -38
Score: 6.1
Sequence: CTAACGAGCGTTTGTTTC
Locus tag: Dgeo_0862
Name: mcm
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
mcm
Methylmalonyl-CoA mutase (EC 5.4.99.2)

Position: -27
Score: 6.2
Sequence: CTAACAAGCGTTTGGTAG
Locus tag: Dgeo_1179
Name: bcd2
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
bcd2
Butyryl-CoA dehydrogenase (EC 1.3.99.2)

Position: -55
Score: 5.7
Sequence: CTAACGTGCGTTCGTTCG
Locus tag: Dgeo_1320
Name: mcm2
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
mcm2
Methylmalonyl-CoA mutase (EC 5.4.99.2)

Position: -31
Score: 6.4
Sequence: CTAACGGGCGTTTGTTAG
Locus tag: Dgeo_0811
Name: pccB
Funciton: Propionyl-CoA carboxylase (EC 6.4.1.3)
Locus tag: Dgeo_0812
Name: bcd
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.8.1)
pccB
Propionyl-CoA carboxylase (EC 6.4.1.3)
bcd
Butyryl-CoA dehydrogenase (EC 1.3.8.1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD