Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of VanR in Xanthomonas campestris pv. campestris str. ATCC 33913

Properties
Regulator type: Transcription factor
TF locus tag: XCC0803
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Regulog: VanR - Xanthomonadales
Statistics of regulated genes:
- Genes 3
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -158
Score: 3.6
Sequence: TTGGGATCCCAA
Position: -106
Score: 4.3
Sequence: TTGGGATCCAAA
Position: -1
Score: 4
Sequence: AATGGAGCCCAT
Locus tag: XCC0803
Name: vanR
Funciton: Transcriptional regulator for ferulate or vanillate catabolism
vanR
Transcriptional regulator for ferulate or vanillate catabolism

Position: -247
Score: 4
Sequence: ATGGGCTCCATT
Position: -142
Score: 4.3
Sequence: TTTGGATCCCAA
Position: -90
Score: 3.6
Sequence: TTGGGATCCCAA
Locus tag: XCC0804
Name: pcaH
Funciton: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
Locus tag: XCC0805
Name: ligA
Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
pcaH
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
ligA
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD