Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LiuQ in Leptothrix cholodnii SP-6

Properties
Regulator type: Transcription factor
TF locus tag: Lcho_2120
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuQ - Comamonadaceae
Statistics of regulated genes:
- Genes 6
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -131
Score: 5
Sequence: ATGAGCTTTACTCAA
Position: -18
Score: 5.5
Sequence: TTGAGTGATACTCAA
Locus tag: Lcho_2120
Name: liuQ
Funciton: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
liuQ
Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family

Position: -175
Score: 5.5
Sequence: TTGAGTATCACTCAA
Position: -62
Score: 5
Sequence: TTGAGTAAAGCTCAT
Locus tag: Lcho_2119
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Lcho_2118
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Lcho_2117
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Lcho_2116
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Lcho_2115
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD