Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of FadP in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type: Transcription factor
TF locus tag: Rfer_3520
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Regulog: FadP - Comamonadaceae
Statistics of regulated genes:
- Genes 16
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 46 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -26
Score: 5.6
Sequence: TAGCACGATCGTTCTT
Locus tag: Rfer_3520
Name: fadP
Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: Rfer_3519
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Rfer_3518
Name: null
Funciton: hypothetical protein
Locus tag: Rfer_3517
Name: acdB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: Rfer_3516
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadP
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
hypothetical protein
acdB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -85
Score: 5.5
Sequence: AAGAACGATCGTTCTA
Locus tag: Rfer_3018
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Position: -163
Score: 5
Sequence: AAGCACGACCGTACTA
Locus tag: Rfer_1957
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Rfer_1958
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Rfer_1959
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Rfer_1960
Name: null
Funciton: Dioxygenases related to 2-nitropropane dioxygenase
etfB
Electron transfer flavoprotein, beta subunit
etfA
Electron transfer flavoprotein, alpha subunit
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Dioxygenases related to 2-nitropropane dioxygenase

Position: -40
Score: 5.7
Sequence: TCGCACGATCGTTCTA
Locus tag: Rfer_2386
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Rfer_2385
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Rfer_2384
Name: acdH3
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
acdH3
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -29
Score: 5.5
Sequence: TAGCACGGTCGTTCTA
Locus tag: Rfer_3608
Name: null
Funciton: FIG026291: Hypothetical periplasmic protein
FIG026291: Hypothetical periplasmic protein

Position: -144
Score: 5.5
Sequence: TCGCACGATCGTGCTA
Locus tag: Rfer_1646
Name: acdQ
Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: Rfer_1645
Name: acdP
Funciton: Acyl-CoA dehydrogenase family protein
acdQ
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdP
Acyl-CoA dehydrogenase family protein
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD