Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of FadP in Polaromonas naphthalenivorans CJ2

Properties
Regulator type: Transcription factor
TF locus tag: Pnap_3478
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Regulog: FadP - Comamonadaceae
Statistics of regulated genes:
- Genes 13
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 46 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -31
Score: 5.7
Sequence: TAGAACGACCGTTCTT
Locus tag: Pnap_3478
Name: fadP
Funciton: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Locus tag: Pnap_3477
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Pnap_3476
Name: acdB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: Pnap_3475
Name: null
Funciton: hypothetical protein
Locus tag: Pnap_3474
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Pnap_3473
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
fadP
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
acdB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
hypothetical protein
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
echH
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -147
Score: 5.7
Sequence: TAGAACGACCGTTCTT
Locus tag: Pnap_1223
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Pnap_1224
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Pnap_1225
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Pnap_1226
Name: null
Funciton: Dioxygenases related to 2-nitropropane dioxygenase
etfB
Electron transfer flavoprotein, beta subunit
etfA
Electron transfer flavoprotein, alpha subunit
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Dioxygenases related to 2-nitropropane dioxygenase

Position: -106
Score: 4.9
Sequence: AAGAACGGTCGTACTA
Locus tag: Pnap_1842
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Pnap_1843
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)

Position: -41
Score: 5.5
Sequence: AAGAACGACCGTTCTA
Locus tag: Pnap_3655
Name: null
Funciton: FIG026291: Hypothetical periplasmic protein
FIG026291: Hypothetical periplasmic protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD