Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of Rex in Roseiflexus castenholzii DSM 13941

Properties
Regulator type: Transcription factor
TF locus tag: Rcas_1392
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Chloroflexia
Statistics of regulated genes:
- Genes 28
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 49 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -127
Score: 4.1
Sequence: TCGTGCAACTTTTCACGT
Locus tag: Rcas_3558
Name: cyoA
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Rcas_3557
Name: cyoB
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
cyoA
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
cyoB
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)

Position: -115
Score: 3.9
Sequence: CTGTTCCTTTCATCACAA
Locus tag: Rcas_4255
Name: fpr
Funciton: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
fpr
Ferredoxin--NADP(+) reductase (EC 1.18.1.2)

Position: -79
Score: 5.3
Sequence: TTGTGATTATTATTACAA
Position: -53
Score: 5.2
Sequence: TCGTGAAGCATATCACGA
Locus tag: Rcas_3898
Name: Cagg_2669
Funciton: Cytochrome c family protein
Locus tag: Rcas_3899
Name: Cagg_2670
Funciton: hypothetical protein
Cagg_2669
Cytochrome c family protein
Cagg_2670
hypothetical protein

Position: -44
Score: 4.3
Sequence: TTGTGCAAGATTTCACGG
Locus tag: Rcas_3936
Name: Cagg_1949
Funciton: GCN5-related N-acetyltransferase
Cagg_1949
GCN5-related N-acetyltransferase

Position: -36
Score: 4.4
Sequence: TTGTGAAAGTGTTCTCAA
Locus tag: Rcas_1271
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: Rcas_1270
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: Rcas_1269
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: Rcas_1268
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: Rcas_1267
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: Rcas_1266
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: Rcas_1265
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: Rcas_1264
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
atpB
ATP synthase A chain (EC 3.6.3.14)
atpE
ATP synthase C chain (EC 3.6.3.14)
atpF
ATP synthase B chain (EC 3.6.3.14)
atpH
ATP synthase delta chain (EC 3.6.3.14)
atpA
ATP synthase alpha chain (EC 3.6.3.14)
atpG
ATP synthase gamma chain (EC 3.6.3.14)
atpD
ATP synthase beta chain (EC 3.6.3.14)
atpC
ATP synthase epsilon chain (EC 3.6.3.14)

Position: -48
Score: 5.8
Sequence: TTGTTATGTATTTCACAA
Locus tag: Rcas_2323
Name: hepT
Funciton: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
hepT
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)

Position: -109
Score: 4.3
Sequence: TAGTGCTACACTTCACAT
Locus tag: Rcas_1392
Name: rex
Funciton: Redox-sensitive transcriptional regulator Rex
rex
Redox-sensitive transcriptional regulator Rex

Position: -64
Score: 5
Sequence: TTGTGATATACTCAACAA
Locus tag: Rcas_2088
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Rcas_2089
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Rcas_2090
Name: nuoC
Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: Rcas_2091
Name: nuoD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: Rcas_2092
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: Rcas_2093
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Rcas_2094
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Rcas_2095
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
nuoC
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
nuoD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)

Position: -42
Score: 3.9
Sequence: TCGTGATGTGTTGCACGG
Locus tag: Rcas_2846
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
pckA
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)

Position: -113
Score: 4.7
Sequence: TTGTGAAGTTTGACACAA
Locus tag: Rcas_4304
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-)

Position: -69
Score: 4.7
Sequence: TTGTGATGTTTGTCACCT
Locus tag: Rcas_3744
Name: bchY
Funciton: Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
Locus tag: Rcas_3743
Name: bchZ
Funciton: Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
bchY
Chlorophyllide reductase subunit BchY (EC 1.18.-.-)
bchZ
Chlorophyllide reductase subunit BchZ (EC 1.18.-.-)
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